CNRS Nantes University US2B US2B
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***  bacteriorhodopsin  ***

CA distance fluctuations for 2404222055381936730

---  normal mode 9  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
VAL 180 0.01 ILE 4 -0.22 GLU 234
ASN 176 0.01 THR 5 -0.23 GLU 234
ASN 176 0.01 GLY 6 -0.21 GLU 234
ASN 176 0.02 ARG 7 -0.21 GLU 234
ASN 176 0.02 PRO 8 -0.22 GLU 234
ASN 176 0.02 GLU 9 -0.22 GLU 234
ASN 176 0.01 TRP 10 -0.24 GLU 234
VAL 173 0.01 ILE 11 -0.27 GLU 234
VAL 173 0.02 TRP 12 -0.26 GLU 234
VAL 177 0.01 LEU 13 -0.25 GLU 234
ALA 84 0.01 ALA 14 -0.28 GLU 234
SER 169 0.01 LEU 15 -0.31 GLU 234
VAL 173 0.01 GLY 16 -0.29 GLU 234
THR 55 0.01 THR 17 -0.29 GLU 234
PHE 54 0.01 ALA 18 -0.33 GLU 234
ILE 52 0.01 LEU 19 -0.35 GLU 234
ILE 52 0.01 MET 20 -0.32 GLU 234
ALA 51 0.01 GLY 21 -0.33 GLU 234
LEU 48 0.01 LEU 22 -0.39 GLU 234
LEU 48 0.01 GLY 23 -0.39 GLU 234
LEU 48 0.02 THR 24 -0.35 GLU 234
GLN 105 0.02 LEU 25 -0.39 GLU 234
GLN 105 0.01 TYR 26 -0.47 GLU 234
ALA 44 0.02 PHE 27 -0.43 GLU 234
ALA 44 0.02 LEU 28 -0.38 GLU 234
ALA 44 0.02 VAL 29 -0.47 GLU 234
GLN 105 0.02 LYS 30 -0.56 GLU 234
MET 32 0.03 GLY 31 -0.44 GLU 234
GLY 31 0.03 MET 32 -0.43 GLU 234
ARG 225 0.02 GLY 33 -0.52 GLU 234
ARG 225 0.03 VAL 34 -0.40 GLU 234
SER 226 0.02 SER 35 -0.20 GLU 234
ASP 104 0.02 ASP 36 -0.11 ALA 233
ALA 233 0.08 PRO 37 -0.04 TYR 64
ALA 233 0.07 ASP 38 -0.03 ARG 164
GLN 105 0.02 ALA 39 -0.21 GLU 234
MET 32 0.02 LYS 40 -0.15 GLU 234
GLU 232 0.02 LYS 41 -0.06 GLU 234
GLN 105 0.02 PHE 42 -0.18 GLU 234
GLN 105 0.02 TYR 43 -0.27 GLU 234
LEU 28 0.02 ALA 44 -0.17 GLU 234
GLN 105 0.02 ILE 45 -0.15 GLU 234
GLN 105 0.02 THR 46 -0.25 GLU 234
GLN 105 0.02 THR 47 -0.28 GLU 234
THR 24 0.02 LEU 48 -0.20 GLU 234
LEU 109 0.01 VAL 49 -0.21 GLU 234
LEU 109 0.01 PRO 50 -0.27 GLU 234
GLY 21 0.01 ALA 51 -0.25 GLU 234
GLY 21 0.01 ILE 52 -0.19 GLU 234
PHE 54 0.01 ALA 53 -0.22 GLU 234
ALA 53 0.01 PHE 54 -0.25 GLU 234
LEU 87 0.02 THR 55 -0.21 GLU 234
ASP 85 0.01 MET 56 -0.19 GLU 234
LEU 58 0.01 TYR 57 -0.23 GLU 234
TYR 57 0.01 LEU 58 -0.23 GLU 234
ALA 84 0.01 SER 59 -0.19 GLU 234
LEU 181 0.01 MET 60 -0.20 GLU 234
LEU 181 0.01 LEU 61 -0.22 GLU 234
GLY 120 0.01 LEU 62 -0.21 GLU 234
TYR 64 0.01 GLY 63 -0.18 GLU 234
GLY 63 0.01 TYR 64 -0.16 GLU 234
GLY 120 0.02 GLY 65 -0.16 GLU 234
SER 183 0.02 LEU 66 -0.15 GLU 234
SER 183 0.02 THR 67 -0.13 GLU 234
VAL 180 0.02 MET 68 -0.12 GLU 234
VAL 180 0.02 VAL 69 -0.10 GLU 234
VAL 180 0.02 PRO 70 -0.10 GLU 234
VAL 180 0.03 PHE 71 -0.09 GLU 234
ALA 196 0.04 GLY 72 -0.09 GLU 234
GLY 197 0.04 GLY 73 -0.09 GLU 234
GLY 197 0.04 GLU 74 -0.11 GLU 234
PRO 200 0.03 GLN 75 -0.12 GLU 234
VAL 180 0.03 ASN 76 -0.13 GLU 234
VAL 180 0.02 PRO 77 -0.14 GLU 234
VAL 180 0.02 ILE 78 -0.14 GLU 234
VAL 180 0.02 TYR 79 -0.15 GLU 234
SER 183 0.02 TRP 80 -0.13 GLU 234
ILE 119 0.01 ALA 81 -0.15 GLU 234
VAL 179 0.01 ARG 82 -0.16 GLU 234
ILE 119 0.02 TYR 83 -0.12 GLU 234
ILE 119 0.02 ALA 84 -0.11 GLU 234
THR 55 0.02 ASP 85 -0.15 GLU 234
THR 55 0.01 TRP 86 -0.13 GLU 234
THR 55 0.02 LEU 87 -0.08 GLU 234
GLY 113 0.01 PHE 88 -0.09 GLU 234
PRO 91 0.01 THR 89 -0.14 GLU 234
GLU 232 0.02 THR 90 -0.11 GLU 234
GLU 232 0.03 PRO 91 -0.05 GLU 234
GLU 232 0.02 LEU 92 -0.09 GLU 234
GLU 232 0.02 LEU 93 -0.14 GLU 234
GLU 232 0.05 LEU 94 -0.06 GLU 234
GLU 232 0.06 LEU 95 -0.02 GLY 120
GLU 232 0.04 ASP 96 -0.10 GLU 234
GLU 232 0.06 LEU 97 -0.08 GLU 234
GLU 232 0.11 ALA 98 -0.01 GLY 120
GLU 232 0.13 LEU 99 -0.02 PHE 88
GLU 232 0.11 LEU 100 -0.03 GLU 234
GLU 232 0.16 VAL 101 -0.02 ALA 160
ALA 233 0.23 ASP 102 -0.02 PHE 88
ALA 233 0.19 ALA 103 -0.01 GLY 120
GLU 234 0.25 ASP 104 -0.02 LYS 159
GLU 234 0.24 GLN 105 -0.02 GLY 120
GLU 234 0.21 GLY 106 -0.02 GLY 120
ALA 233 0.15 THR 107 -0.01 GLY 155
ALA 233 0.13 ILE 108 -0.02 GLY 120
ALA 233 0.13 LEU 109 -0.03 GLY 120
ALA 233 0.11 ALA 110 -0.01 GLY 120
GLU 232 0.08 LEU 111 -0.01 GLY 120
GLU 232 0.07 VAL 112 -0.03 GLY 120
ALA 233 0.07 GLY 113 -0.03 GLY 120
GLU 232 0.06 ALA 114 -0.01 LEU 109
GLU 232 0.05 ASP 115 -0.02 GLU 234
GLU 232 0.04 GLY 116 -0.03 GLY 120
GLU 232 0.04 ILE 117 -0.02 GLY 113
GLU 232 0.04 MET 118 -0.04 GLU 234
GLU 232 0.02 ILE 119 -0.06 GLU 234
GLU 232 0.02 GLY 120 -0.04 GLU 234
GLU 232 0.03 THR 121 -0.04 GLU 234
VAL 179 0.02 GLY 122 -0.07 GLU 234
VAL 179 0.02 LEU 123 -0.08 GLU 234
TYR 150 0.02 VAL 124 -0.06 GLU 234
TYR 150 0.03 GLY 125 -0.07 GLU 234
SER 183 0.03 ALA 126 -0.09 GLU 234
SER 183 0.02 LEU 127 -0.08 GLU 234
SER 183 0.02 THR 128 -0.07 GLU 234
SER 183 0.02 LYS 129 -0.07 GLU 234
PHE 153 0.03 VAL 130 -0.06 GLU 234
ASN 176 0.03 TYR 131 -0.07 GLU 234
PHE 153 0.04 SER 132 -0.05 GLU 234
TYR 150 0.03 TYR 133 -0.04 GLU 234
PHE 153 0.03 ARG 134 -0.06 GLU 234
PHE 153 0.04 PHE 135 -0.06 GLU 234
TYR 150 0.04 VAL 136 -0.03 GLU 234
TYR 150 0.03 TRP 137 -0.04 GLU 234
PHE 153 0.04 TRP 138 -0.06 GLU 234
TYR 150 0.05 ALA 139 -0.04 GLU 234
GLU 232 0.04 ILE 140 -0.02 ALA 139
GLU 232 0.04 SER 141 -0.04 GLU 234
GLU 232 0.04 THR 142 -0.05 GLU 234
GLU 232 0.05 ALA 143 -0.01 GLU 234
GLU 232 0.05 ALA 144 -0.01 GLY 113
GLU 232 0.05 MET 145 -0.04 GLU 234
GLU 232 0.06 LEU 146 -0.03 GLU 234
GLU 232 0.07 TYR 147 -0.01 VAL 180
GLU 232 0.07 ILE 148 -0.01 VAL 180
GLU 232 0.06 LEU 149 -0.04 GLU 234
GLU 232 0.07 TYR 150 -0.02 VAL 180
GLU 232 0.09 VAL 151 -0.01 ASN 176
GLU 232 0.07 LEU 152 -0.02 GLU 234
GLU 232 0.07 PHE 153 -0.02 GLU 234
GLU 232 0.09 PHE 154 -0.01 ASN 176
GLU 232 0.11 GLY 155 -0.01 LYS 172
GLU 232 0.11 PHE 156 -0.01 LYS 172
GLU 232 0.09 THR 157 -0.02 LYS 172
GLU 232 0.11 SER 158 -0.02 LYS 172
ALA 233 0.15 LYS 159 -0.02 ASP 104
GLU 232 0.12 ALA 160 -0.02 VAL 101
GLU 232 0.10 GLU 161 -0.02 SER 169
ALA 233 0.17 SER 162 -0.03 PRO 165
GLU 232 0.19 MET 163 -0.04 PRO 165
GLU 232 0.08 ARG 164 -0.03 ASP 38
VAL 187 0.04 PRO 165 -0.17 GLU 234
VAL 187 0.04 GLU 166 -0.32 GLU 234
PHE 171 0.04 VAL 167 -0.18 GLU 234
ARG 164 0.07 ALA 168 -0.14 GLU 234
ARG 164 0.05 SER 169 -0.28 GLU 234
VAL 187 0.04 THR 170 -0.32 GLU 234
ARG 164 0.05 PHE 171 -0.19 GLU 234
ARG 164 0.06 LYS 172 -0.20 GLU 234
VAL 187 0.05 VAL 173 -0.29 GLU 234
VAL 187 0.04 LEU 174 -0.25 GLU 234
VAL 187 0.05 ARG 175 -0.17 GLU 234
VAL 187 0.06 ASN 176 -0.21 GLU 234
ALA 184 0.05 VAL 177 -0.25 GLU 234
VAL 187 0.04 THR 178 -0.19 GLU 234
VAL 187 0.06 VAL 179 -0.15 GLU 234
VAL 187 0.06 VAL 180 -0.19 GLU 234
ALA 184 0.05 LEU 181 -0.21 GLU 234
ARG 164 0.04 TRP 182 -0.16 GLU 234
VAL 187 0.06 SER 183 -0.14 GLU 234
VAL 180 0.06 ALA 184 -0.17 GLU 234
ASN 176 0.04 TYR 185 -0.15 GLU 234
SER 183 0.05 PRO 186 -0.12 GLU 234
VAL 180 0.06 VAL 187 -0.13 GLU 234
VAL 180 0.05 VAL 188 -0.16 GLU 234
VAL 180 0.04 TRP 189 -0.13 GLU 234
VAL 180 0.05 LEU 190 -0.11 GLU 234
VAL 180 0.05 ILE 191 -0.13 GLU 234
VAL 180 0.04 GLY 192 -0.15 GLU 234
GLU 74 0.04 SER 193 -0.14 GLU 234
VAL 180 0.04 GLU 194 -0.12 GLU 234
VAL 180 0.04 GLY 195 -0.11 GLU 234
GLY 72 0.04 ALA 196 -0.11 GLU 234
GLU 74 0.04 GLY 197 -0.13 GLU 234
ASN 176 0.04 ILE 198 -0.14 GLU 234
ASN 176 0.04 VAL 199 -0.17 GLU 234
GLU 74 0.04 PRO 200 -0.18 GLU 234
VAL 180 0.03 LEU 201 -0.18 GLU 234
ASN 176 0.03 ASN 202 -0.21 GLU 234
VAL 173 0.03 ILE 203 -0.21 GLU 234
ASN 176 0.03 GLU 204 -0.19 GLU 234
VAL 177 0.03 THR 205 -0.21 GLU 234
VAL 173 0.03 LEU 206 -0.24 GLU 234
VAL 177 0.04 LEU 207 -0.23 GLU 234
VAL 177 0.03 PHE 208 -0.22 GLU 234
VAL 173 0.02 MET 209 -0.26 GLU 234
VAL 173 0.03 VAL 210 -0.28 GLU 234
VAL 177 0.03 LEU 211 -0.25 GLU 234
ARG 164 0.02 ASP 212 -0.25 GLU 234
ARG 164 0.01 VAL 213 -0.30 GLU 234
GLY 218 0.03 SER 214 -0.31 GLU 234
ARG 164 0.02 ALA 215 -0.26 GLU 234
LEU 211 0.01 LYS 216 -0.28 GLU 234
VAL 210 0.01 VAL 217 -0.36 GLU 234
SER 214 0.03 GLY 218 -0.38 GLU 234
SER 214 0.02 PHE 219 -0.33 GLU 234
SER 214 0.01 GLY 220 -0.37 GLU 234
VAL 210 0.02 LEU 221 -0.48 GLU 234
LEU 207 0.02 ILE 222 -0.46 GLU 234
VAL 187 0.02 LEU 223 -0.40 GLU 234
VAL 34 0.02 LEU 224 -0.49 GLU 234
VAL 34 0.03 ARG 225 -0.64 GLU 234
VAL 34 0.03 SER 226 -0.57 GLU 234
VAL 187 0.02 ARG 227 -0.59 GLU 234
VAL 187 0.02 ALA 228 -0.32 GLU 234
ASP 102 0.02 ILE 229 -0.27 GLU 234
ASP 102 0.04 PHE 230 -0.26 GLU 234
GLU 232 0.14 GLY 231 -0.04 GLY 33
ASP 102 0.22 GLU 232 -0.27 ARG 227
ASP 104 0.24 ALA 233 -0.48 ARG 227
ASP 104 0.25 GLU 234 -0.64 ARG 225

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.