Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *

CA distance fluctuations for 240110225555577823

--- normal mode 10 ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok

largest increase ref largest decrease
ARG 105 0.57 PRO 3 -0.20 GLU 119

ARG 105 0.28 LEU 4 -0.15 CYS 147

LEU 104 0.12 CYS 5 -0.13 GLN 69

ALA 16 0.12 ALA 6 -0.09 GLN 69

PRO 3 0.16 ASN 7 -0.07 GLN 69

LYS 120 0.11 LEU 8 -0.12 GLN 69

GLU 36 0.11 VAL 9 -0.11 ASN 70

GLU 36 0.16 PRO 10 -0.10 LYS 164

GLU 36 0.19 VAL 11 -0.08 ARG 105

GLU 36 0.22 PRO 12 -0.07 ARG 105

GLU 36 0.25 ILE 13 -0.05 THR 107

GLU 36 0.25 THR 14 -0.06 ASP 129

GLU 36 0.26 ASN 15 -0.06 GLY 23

PRO 3 0.27 ALA 16 -0.07 ASP 129

PRO 3 0.25 THR 17 -0.07 ASP 129

GLU 36 0.28 LEU 18 -0.07 GLY 23

GLU 36 0.26 ASP 19 -0.09 ASP 129

PRO 3 0.29 ARG 20 -0.10 ASP 129

GLU 36 0.27 ILE 21 -0.06 ASP 129

GLU 36 0.28 THR 22 -0.11 GLY 23

GLU 36 0.28 GLY 23 -0.11 THR 22

GLU 36 0.28 LYS 24 -0.07 LYS 161

GLU 36 0.29 TRP 25 -0.06 ASP 19

GLU 36 0.28 PHE 26 -0.07 THR 56

GLU 36 0.28 TYR 27 -0.12 GLU 57

GLU 36 0.23 ILE 28 -0.11 GLU 57

GLU 36 0.19 ALA 29 -0.15 GLU 57

LYS 120 0.17 SER 30 -0.18 GLU 57

LYS 120 0.13 ALA 31 -0.20 GLY 93

LYS 120 0.11 PHE 32 -0.28 GLY 93

LYS 120 0.07 ARG 33 -0.33 GLY 93

LYS 120 0.08 ASN 34 -0.43 GLY 93

LYS 120 0.09 GLU 35 -0.49 GLY 93

LYS 120 0.14 GLU 36 -0.66 GLY 93

LYS 120 0.18 TYR 37 -0.42 GLY 93

LYS 120 0.16 ASN 38 -0.36 GLY 93

LYS 120 0.20 LYS 39 -0.49 GLY 94

GLU 36 0.28 SER 40 -0.34 GLU 57

GLU 36 0.26 VAL 41 -0.29 GLU 57

LYS 120 0.24 GLN 42 -0.28 GLU 57

GLU 36 0.31 GLU 43 -0.31 GLU 57

GLU 36 0.32 ILE 44 -0.27 GLU 57

GLU 36 0.29 GLN 45 -0.25 GLU 57

GLU 36 0.29 ALA 46 -0.19 GLU 57

GLU 36 0.32 THR 47 -0.16 GLU 57

GLU 36 0.30 PHE 48 -0.10 THR 56

GLU 36 0.32 PHE 49 -0.07 GLU 36

GLU 36 0.31 TYR 50 -0.08 PHE 51

GLU 36 0.31 PHE 51 -0.08 TYR 50

GLU 36 0.30 THR 52 -0.08 ASN 54

GLU 36 0.31 PRO 53 -0.07 LYS 170

GLU 36 0.31 ASN 54 -0.09 LYS 170

GLU 36 0.30 LYS 55 -0.08 GLY 23

GLN 71 0.38 THR 56 -0.09 LYS 170

GLN 71 0.43 GLU 57 -0.10 LYS 174

GLU 36 0.33 ASP 58 -0.07 LYS 170

GLU 36 0.35 THR 59 -0.08 GLN 171

GLU 36 0.34 ILE 60 -0.07 LYS 170

GLU 36 0.34 PHE 61 -0.10 GLU 36

GLU 36 0.36 LEU 62 -0.12 GLU 36

GLU 36 0.34 ARG 63 -0.14 GLU 36

GLU 36 0.36 GLU 64 -0.15 TYR 37

GLU 36 0.33 TYR 65 -0.14 THR 56

GLU 36 0.35 GLN 66 -0.22 GLU 57

GLU 36 0.31 THR 67 -0.29 GLU 57

ARG 95 0.33 ARG 68 -0.35 GLU 57

ARG 95 0.34 GLN 69 -0.41 GLU 57

ARG 95 0.31 ASN 70 -0.39 GLU 57

GLU 96 0.36 GLN 71 -0.47 GLU 57

GLU 96 0.35 CYS 72 -0.34 GLU 57

GLU 96 0.34 PHE 73 -0.29 GLU 57

GLU 36 0.33 TYR 74 -0.23 SER 40

GLU 36 0.36 ASN 75 -0.27 GLU 36

GLU 36 0.35 SER 76 -0.22 GLU 36

GLU 36 0.40 SER 77 -0.19 GLU 36

GLU 36 0.38 TYR 78 -0.19 LEU 79

GLU 36 0.39 LEU 79 -0.19 TYR 78

GLU 36 0.37 ASN 80 -0.19 LEU 168

GLU 36 0.33 VAL 81 -0.12 LEU 168

GLU 36 0.29 GLN 82 -0.14 PRO 167

GLU 36 0.27 ARG 83 -0.07 PRO 167

GLU 36 0.24 GLU 84 -0.09 PRO 167

GLU 36 0.23 ASN 85 -0.12 PRO 167

GLU 36 0.24 GLY 86 -0.08 PRO 167

GLU 36 0.27 THR 87 -0.12 LEU 168

GLU 36 0.32 VAL 88 -0.14 LEU 168

GLU 36 0.36 SER 89 -0.22 CYS 72

GLU 36 0.43 ARG 90 -0.25 TYR 74

GLU 36 0.45 TYR 91 -0.29 PHE 73

GLU 36 0.56 GLU 92 -0.31 GLU 36

GLU 36 0.71 GLY 93 -0.47 GLU 36

GLU 36 0.69 GLY 94 -0.39 GLU 36

GLU 36 0.51 ARG 95 -0.36 GLN 69

GLU 36 0.43 GLU 96 -0.32 GLN 71

GLU 36 0.37 HIS 97 -0.27 CYS 72

GLU 36 0.31 VAL 98 -0.23 CYS 72

GLU 36 0.25 ALA 99 -0.18 CYS 72

GLU 36 0.22 HIS 100 -0.12 CYS 72

GLU 36 0.23 LEU 101 -0.08 GLU 57

GLU 36 0.19 LEU 102 -0.07 GLU 57

PRO 3 0.31 PHE 103 -0.06 PRO 12

PRO 3 0.41 LEU 104 -0.06 VAL 11

PRO 3 0.57 ARG 105 -0.08 VAL 11

PRO 3 0.45 ASP 106 -0.06 PRO 12

PRO 3 0.40 THR 107 -0.07 PRO 12

PRO 3 0.34 LYS 108 -0.05 PRO 12

PRO 3 0.30 THR 109 -0.04 PRO 12

PRO 3 0.25 LEU 110 -0.05 GLU 57

GLU 36 0.21 MET 111 -0.09 GLU 57

GLU 36 0.22 PHE 112 -0.12 ASN 75

GLU 36 0.17 GLY 113 -0.15 ASN 75

GLU 36 0.16 SER 114 -0.21 CYS 72

LYS 120 0.11 TYR 115 -0.27 GLN 69

LYS 120 0.10 LEU 116 -0.23 GLN 69

PRO 10 0.10 ASP 117 -0.30 GLN 69

PRO 10 0.08 ASP 118 -0.33 GLN 69

PRO 10 0.07 GLU 119 -0.29 GLN 69

PRO 10 0.06 LYS 120 -0.34 GLY 93

ASN 85 0.07 ASN 121 -0.35 GLY 93

LYS 120 0.08 TRP 122 -0.26 GLY 93

LYS 120 0.12 GLY 123 -0.22 GLY 93

LYS 120 0.14 LEU 124 -0.16 GLU 57

GLU 36 0.20 SER 125 -0.15 GLU 57

GLU 36 0.21 PHE 126 -0.11 GLU 57

GLU 36 0.24 TYR 127 -0.07 GLU 57

PRO 3 0.25 ALA 128 -0.06 ARG 20

PRO 3 0.26 ASP 129 -0.10 ARG 20

GLU 36 0.24 LYS 130 -0.07 ARG 20

GLU 36 0.24 PRO 131 -0.06 ASP 19

PRO 3 0.22 GLU 132 -0.08 ASP 159

PRO 3 0.24 THR 133 -0.04 THR 158

PRO 3 0.27 THR 134 -0.05 THR 158

PRO 3 0.25 LYS 135 -0.06 GLU 43

PRO 3 0.34 GLU 136 -0.05 VAL 155

PRO 3 0.32 GLN 137 -0.04 PRO 12

PRO 3 0.23 LEU 138 -0.06 GLU 57

PRO 3 0.24 GLY 139 -0.07 GLY 93

PRO 3 0.32 GLU 140 -0.06 GLN 69

PRO 3 0.18 PHE 141 -0.09 GLU 57

LYS 120 0.11 TYR 142 -0.11 GLY 93

PRO 3 0.10 GLU 143 -0.11 GLY 93

LYS 120 0.10 ALA 144 -0.12 GLN 69

LYS 120 0.09 LEU 145 -0.16 GLY 93

LYS 120 0.07 ASP 146 -0.16 GLY 93

LYS 120 0.06 CYS 147 -0.20 PRO 3

VAL 9 0.06 LEU 148 -0.20 GLY 93

GLU 132 0.05 ARG 149 -0.20 GLY 93

LYS 120 0.06 ILE 150 -0.22 GLY 93

LYS 120 0.06 PRO 151 -0.20 GLY 93

LYS 120 0.09 ARG 152 -0.16 GLY 93

LYS 120 0.09 SER 153 -0.17 GLY 93

LYS 120 0.10 ASP 154 -0.22 GLY 93

LYS 120 0.14 VAL 155 -0.18 GLU 57

LYS 120 0.17 MET 156 -0.21 GLU 57

LYS 120 0.20 TYR 157 -0.18 GLU 57

GLU 36 0.24 THR 158 -0.17 GLU 57

LYS 120 0.24 ASP 159 -0.17 THR 56

GLU 36 0.24 TRP 160 -0.13 THR 56

LYS 120 0.24 LYS 161 -0.16 THR 56

LYS 120 0.26 LYS 162 -0.21 THR 56

GLU 36 0.27 ASP 163 -0.19 THR 56

GLU 96 0.28 LYS 164 -0.24 THR 56

GLU 36 0.28 CYS 165 -0.17 THR 56

GLU 36 0.25 GLU 166 -0.09 ASP 19

GLU 36 0.23 PRO 167 -0.11 ASP 19

GLU 36 0.24 LEU 168 -0.13 SER 40

GLU 36 0.25 GLU 169 -0.11 GLU 36

GLU 36 0.21 LYS 170 -0.11 ASP 19

GLU 36 0.19 GLN 171 -0.15 ASP 19

GLU 36 0.20 HIS 172 -0.16 ASP 19

CYS 147 0.26 PRO 3 -0.48 ARG 105

CYS 147 0.18 LEU 4 -0.34 ARG 105

GLY 93 0.14 CYS 5 -0.12 ARG 105

GLY 93 0.09 ALA 6 -0.13 ALA 16

GLY 93 0.07 ASN 7 -0.17 PRO 3

GLN 71 0.12 LEU 8 -0.11 LYS 120

LYS 164 0.11 VAL 9 -0.13 LYS 120

PRO 167 0.11 PRO 10 -0.16 GLU 36

ARG 105 0.07 VAL 11 -0.19 GLU 36

THR 107 0.07 PRO 12 -0.22 GLU 36

GLY 23 0.05 ILE 13 -0.24 GLU 36

GLY 23 0.06 THR 14 -0.24 GLU 36

GLY 23 0.07 ASN 15 -0.25 GLU 36

ASP 129 0.07 ALA 16 -0.27 PRO 3

ASP 129 0.07 THR 17 -0.25 PRO 3

GLY 23 0.09 LEU 18 -0.26 GLU 36

ASP 129 0.09 ASP 19 -0.24 GLU 36

ASP 129 0.10 ARG 20 -0.27 PRO 3

ASP 129 0.06 ILE 21 -0.24 GLU 36

GLY 23 0.14 THR 22 -0.25 GLU 36

THR 22 0.14 GLY 23 -0.24 GLU 36

SER 40 0.07 LYS 24 -0.25 GLU 36

ASP 19 0.07 TRP 25 -0.25 GLU 36

THR 56 0.10 PHE 26 -0.24 GLU 36

THR 56 0.13 TYR 27 -0.24 GLU 36

THR 56 0.12 ILE 28 -0.20 LYS 120

GLU 57 0.16 ALA 29 -0.18 LYS 120

GLU 57 0.19 SER 30 -0.16 LYS 120

GLY 93 0.22 ALA 31 -0.13 LYS 120

GLY 93 0.30 PHE 32 -0.11 LYS 120

GLY 93 0.34 ARG 33 -0.07 PRO 10

GLY 93 0.45 ASN 34 -0.08 ASN 85

GLY 94 0.53 GLU 35 -0.07 LYS 120

GLY 93 0.71 GLU 36 -0.12 LYS 120

GLY 93 0.48 TYR 37 -0.18 LYS 120

GLY 94 0.41 ASN 38 -0.15 LYS 120

GLY 94 0.59 LYS 39 -0.17 LYS 120

GLY 93 0.40 SER 40 -0.26 LYS 120

GLU 57 0.29 VAL 41 -0.23 LYS 120

GLU 57 0.27 GLN 42 -0.22 LYS 120

GLU 57 0.29 GLU 43 -0.29 LYS 120

GLU 57 0.27 ILE 44 -0.28 LYS 120

GLU 57 0.24 GLN 45 -0.27 LYS 120

THR 56 0.19 ALA 46 -0.25 GLU 36

THR 56 0.17 THR 47 -0.27 GLU 36

THR 56 0.12 PHE 48 -0.26 GLU 36

GLU 36 0.11 PHE 49 -0.28 GLU 36

GLU 36 0.10 TYR 50 -0.27 GLU 36

GLU 36 0.09 PHE 51 -0.28 GLU 36

GLU 36 0.09 THR 52 -0.27 GLU 36

GLU 173 0.09 PRO 53 -0.28 GLU 36

GLU 173 0.13 ASN 54 -0.32 GLN 71

GLU 173 0.10 LYS 55 -0.31 GLN 71

GLU 173 0.12 THR 56 -0.40 GLN 71

GLU 173 0.11 GLU 57 -0.47 GLN 71

LYS 170 0.10 ASP 58 -0.32 GLU 36

GLN 171 0.12 THR 59 -0.33 GLU 36

GLU 173 0.09 ILE 60 -0.32 GLU 36

GLU 36 0.15 PHE 61 -0.30 GLU 36

GLU 36 0.17 LEU 62 -0.31 GLU 36

GLU 36 0.20 ARG 63 -0.28 GLU 36

SER 40 0.20 GLU 64 -0.30 GLU 36

SER 40 0.19 TYR 65 -0.27 GLU 36

GLU 57 0.22 GLN 66 -0.30 ARG 95

GLU 57 0.29 THR 67 -0.29 ARG 95

GLU 57 0.34 ARG 68 -0.34 ARG 95

GLU 57 0.37 GLN 69 -0.36 ARG 95

GLU 57 0.37 ASN 70 -0.31 ARG 95

GLU 57 0.43 GLN 71 -0.33 ARG 95

GLU 57 0.34 CYS 72 -0.32 ARG 95

SER 40 0.32 PHE 73 -0.31 ARG 95

SER 40 0.30 TYR 74 -0.27 GLU 36

GLU 36 0.34 ASN 75 -0.29 GLU 36

GLU 36 0.29 SER 76 -0.28 GLU 36

GLU 36 0.26 SER 77 -0.35 GLU 36

LEU 79 0.24 TYR 78 -0.34 GLU 36

TYR 78 0.24 LEU 79 -0.36 GLU 36

LEU 168 0.24 ASN 80 -0.35 GLU 36

LEU 168 0.16 VAL 81 -0.31 GLU 36

PRO 167 0.17 GLN 82 -0.29 GLU 36

PRO 167 0.11 ARG 83 -0.27 GLU 36

PRO 167 0.11 GLU 84 -0.24 GLU 36

PRO 167 0.15 ASN 85 -0.23 GLU 36

PRO 167 0.11 GLY 86 -0.23 GLU 36

LEU 168 0.15 THR 87 -0.26 GLU 36

LEU 168 0.18 VAL 88 -0.30 GLU 36

CYS 72 0.25 SER 89 -0.33 GLU 36

TYR 74 0.29 ARG 90 -0.40 GLU 36

GLU 36 0.32 TYR 91 -0.40 GLU 36

GLU 36 0.44 GLU 92 -0.51 GLU 36

GLU 36 0.61 GLY 93 -0.66 GLU 36

GLU 36 0.46 GLY 94 -0.58 GLU 36

GLN 69 0.34 ARG 95 -0.47 GLU 36

GLN 71 0.36 GLU 96 -0.39 GLU 36

CYS 72 0.30 HIS 97 -0.34 GLU 36

CYS 72 0.26 VAL 98 -0.28 GLU 36

CYS 72 0.20 ALA 99 -0.24 GLU 36

LEU 168 0.14 HIS 100 -0.21 GLU 36

LEU 168 0.09 LEU 101 -0.22 GLU 36

GLU 57 0.08 LEU 102 -0.18 GLU 36

VAL 11 0.06 PHE 103 -0.27 PRO 3

VAL 11 0.06 LEU 104 -0.34 PRO 3

VAL 11 0.07 ARG 105 -0.48 PRO 3

PRO 12 0.06 ASP 106 -0.37 PRO 3

PRO 12 0.07 THR 107 -0.34 PRO 3

PRO 12 0.05 LYS 108 -0.27 PRO 3

THR 56 0.04 THR 109 -0.24 PRO 3

THR 56 0.07 LEU 110 -0.20 GLU 36

GLU 57 0.10 MET 111 -0.18 GLU 36

ASN 75 0.14 PHE 112 -0.20 GLU 36

ASN 75 0.17 GLY 113 -0.16 LYS 120

ASN 75 0.23 SER 114 -0.16 LYS 120

GLN 71 0.27 TYR 115 -0.13 LYS 120

GLN 71 0.23 LEU 116 -0.11 LYS 120

GLN 69 0.28 ASP 117 -0.11 PRO 10

GLN 69 0.32 ASP 118 -0.09 PRO 10

GLY 94 0.30 GLU 119 -0.10 VAL 9

GLY 94 0.37 LYS 120 -0.08 VAL 9

GLY 93 0.39 ASN 121 -0.08 PRO 10

GLY 93 0.30 TRP 122 -0.09 LEU 116

GLY 93 0.25 GLY 123 -0.12 LYS 120

SER 77 0.17 LEU 124 -0.14 LYS 120

ASN 75 0.16 SER 125 -0.17 LYS 120

GLU 57 0.12 PHE 126 -0.17 LYS 120

THR 56 0.09 TYR 127 -0.21 GLU 36

ARG 20 0.06 ALA 128 -0.20 GLU 36

ARG 20 0.10 ASP 129 -0.22 GLU 36

ARG 20 0.08 LYS 130 -0.21 GLU 173

ASP 159 0.08 PRO 131 -0.21 GLU 36

ASP 159 0.08 GLU 132 -0.18 LYS 120

ASP 159 0.06 THR 133 -0.18 PRO 3

THR 158 0.06 THR 134 -0.20 PRO 3

GLU 43 0.07 LYS 135 -0.17 PRO 3

GLU 43 0.05 GLU 136 -0.25 PRO 3

THR 56 0.05 GLN 137 -0.24 PRO 3

THR 56 0.07 LEU 138 -0.15 PRO 3

GLY 93 0.08 GLY 139 -0.16 PRO 3

GLY 93 0.08 GLU 140 -0.22 PRO 3

GLU 57 0.09 PHE 141 -0.13 LYS 120

GLY 93 0.12 TYR 142 -0.11 LYS 120

GLY 93 0.12 GLU 143 -0.09 LYS 120

GLY 93 0.14 ALA 144 -0.10 LYS 120

GLY 93 0.17 LEU 145 -0.09 LYS 120

PRO 3 0.18 ASP 146 -0.06 LYS 120

PRO 3 0.26 CYS 147 -0.07 LEU 104

PRO 3 0.24 LEU 148 -0.07 VAL 9

PRO 3 0.25 ARG 149 -0.06 GLU 132

GLY 93 0.23 ILE 150 -0.06 LYS 120

GLY 94 0.20 PRO 151 -0.06 GLU 132

GLY 93 0.17 ARG 152 -0.08 LYS 120

GLY 94 0.20 SER 153 -0.08 LYS 161

GLY 94 0.24 ASP 154 -0.08 LYS 120

GLU 57 0.19 VAL 155 -0.13 LYS 120

GLU 57 0.21 MET 156 -0.16 LYS 120

GLU 57 0.18 TYR 157 -0.18 LYS 120

THR 56 0.17 THR 158 -0.22 LYS 120

THR 56 0.17 ASP 159 -0.23 LYS 120

THR 56 0.15 TRP 160 -0.22 LYS 120

THR 56 0.17 LYS 161 -0.23 LYS 120

THR 56 0.22 LYS 162 -0.25 LYS 120

THR 56 0.21 ASP 163 -0.24 LYS 120

THR 56 0.25 LYS 164 -0.26 ARG 95

THR 56 0.20 CYS 165 -0.26 ARG 95

THR 56 0.13 GLU 166 -0.22 ARG 95

THR 56 0.14 PRO 167 -0.20 ARG 95

SER 40 0.16 LEU 168 -0.21 ARG 90

SER 40 0.14 GLU 169 -0.20 GLU 36

ASP 19 0.15 LYS 170 -0.18 LYS 130

ASP 19 0.19 GLN 171 -0.15 GLU 36

ASP 19 0.18 HIS 172 -0.16 LYS 130

ASP 19 0.17 GLU 173 -0.21 LYS 130

ASP 19 0.21 LYS 174 -0.18 LYS 130

GLY 23 0.25 GLU 175 -0.16 LYS 130

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APV ***

CA distance fluctuations for 240110225555577823

--- normal mode 10 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *