CNRS Nantes University US2B US2B
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***  bacteriorhodopsin  ***

<R2> analysis for 2404222055381936730

---  normal mode 8  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1796
ILE 40.0053
THR 50.0038
GLY 60.0028
ARG 70.0015
PRO 80.0009
GLU 90.0014
TRP 100.0033
ILE 110.0048
TRP 120.0047
LEU 130.0046
ALA 140.0066
LEU 150.0073
GLY 160.0066
THR 170.0074
ALA 180.0086
LEU 190.0083
MET 200.0076
GLY 210.0084
LEU 220.0085
GLY 230.0069
THR 240.0062
LEU 250.0060
TYR 260.0044
PHE 270.0032
LEU 280.0031
VAL 290.0022
LYS 300.0031
GLY 310.0039
MET 320.0060
GLY 330.0095
VAL 340.0120
SER 350.0167
ASP 360.0171
PRO 370.0173
ASP 380.0120
ALA 390.0092
LYS 400.0103
LYS 410.0090
PHE 420.0045
TYR 430.0044
ALA 440.0057
ILE 450.0056
THR 460.0040
THR 470.0043
LEU 480.0051
VAL 490.0056
PRO 500.0062
ALA 510.0063
ILE 520.0060
ALA 530.0061
PHE 540.0069
THR 550.0069
MET 560.0060
TYR 570.0057
LEU 580.0072
SER 590.0068
MET 600.0050
LEU 610.0055
LEU 620.0071
GLY 630.0062
TYR 640.0079
GLY 650.0064
LEU 660.0064
THR 670.0085
MET 680.0108
VAL 690.0119
PRO 700.0156
PHE 710.0155
GLY 720.0184
GLY 730.0215
GLU 740.0178
GLN 750.0149
ASN 760.0101
PRO 770.0067
ILE 780.0052
TYR 790.0038
TRP 800.0047
ALA 810.0052
ARG 820.0033
TYR 830.0035
ALA 840.0046
ASP 850.0050
TRP 860.0044
LEU 870.0047
PHE 880.0053
THR 890.0057
THR 900.0057
PRO 910.0061
LEU 920.0057
LEU 930.0055
LEU 940.0058
LEU 950.0055
ASP 960.0044
LEU 970.0045
ALA 980.0054
LEU 990.0043
LEU 1000.0027
VAL 1010.0033
ASP 1020.0042
ALA 1030.0062
ASP 1040.0086
GLN 1050.0095
GLY 1060.0104
THR 1070.0090
ILE 1080.0078
LEU 1090.0091
ALA 1100.0090
LEU 1110.0078
VAL 1120.0070
GLY 1130.0074
ALA 1140.0069
ASP 1150.0061
GLY 1160.0052
ILE 1170.0042
MET 1180.0037
ILE 1190.0036
GLY 1200.0043
THR 1210.0024
GLY 1220.0017
LEU 1230.0039
VAL 1240.0064
GLY 1250.0056
ALA 1260.0056
LEU 1270.0087
THR 1280.0108
LYS 1290.0144
VAL 1300.0150
TYR 1310.0138
SER 1320.0136
TYR 1330.0111
ARG 1340.0085
PHE 1350.0080
VAL 1360.0066
TRP 1370.0041
TRP 1380.0032
ALA 1390.0038
ILE 1400.0010
SER 1410.0017
THR 1420.0033
ALA 1430.0041
ALA 1440.0051
MET 1450.0055
LEU 1460.0065
TYR 1470.0076
ILE 1480.0072
LEU 1490.0071
TYR 1500.0085
VAL 1510.0083
LEU 1520.0069
PHE 1530.0073
PHE 1540.0084
GLY 1550.0080
PHE 1560.0062
THR 1570.0061
SER 1580.0067
LYS 1590.0052
ALA 1600.0037
GLU 1610.0048
SER 1620.0037
MET 1630.0025
ARG 1640.0070
PRO 1650.0083
GLU 1660.0069
VAL 1670.0037
ALA 1680.0045
SER 1690.0055
THR 1700.0037
PHE 1710.0034
LYS 1720.0046
VAL 1730.0045
LEU 1740.0041
ARG 1750.0053
ASN 1760.0056
VAL 1770.0052
THR 1780.0055
VAL 1790.0060
VAL 1800.0052
LEU 1810.0052
TRP 1820.0054
SER 1830.0053
ALA 1840.0049
TYR 1850.0036
PRO 1860.0027
VAL 1870.0053
VAL 1880.0046
TRP 1890.0034
LEU 1900.0063
ILE 1910.0079
GLY 1920.0063
SER 1930.0064
GLU 1940.0058
GLY 1950.0078
ALA 1960.0105
GLY 1970.0097
ILE 1980.0107
VAL 1990.0082
PRO 2000.0062
LEU 2010.0038
ASN 2020.0027
ILE 2030.0048
GLU 2040.0037
THR 2050.0022
LEU 2060.0044
LEU 2070.0050
PHE 2080.0037
MET 2090.0051
VAL 2100.0059
LEU 2110.0055
ASP 2120.0054
VAL 2130.0064
SER 2140.0058
ALA 2150.0056
LYS 2160.0058
VAL 2170.0061
GLY 2180.0051
PHE 2190.0047
GLY 2200.0037
LEU 2210.0040
ILE 2220.0036
LEU 2230.0024
LEU 2240.0027
ARG 2250.0047
SER 2260.0060
ARG 2270.0087
ALA 2280.0055
ILE 2290.0055
PHE 2300.0123
GLY 2310.0188
GLU 2320.0260
ALA 2330.0709
GLU 2340.1796

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.