CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  3CYE_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000  ***

<R2> analysis for 240220090630154274

---  normal mode 15  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0814
VAL 10.0124
ILE 20.0111
LEU 30.0096
THR 40.0089
GLY 50.0086
ASN 60.0088
SER 70.0083
SER 80.0061
LEU 90.0075
CYS 100.0091
PRO 110.0093
ILE 120.0094
SER 130.0122
GLY 140.0117
TRP 150.0108
ALA 160.0107
ILE 170.0086
TYR 180.0082
SER 190.0075
LYS 200.0071
ASP 210.0054
ASN 220.0036
GLY 230.0036
ILE 240.0034
ARG 250.0152
ILE 260.0283
GLY 270.0382
SER 280.0547
LYS 290.0600
GLY 300.0457
ASP 310.0378
VAL 320.0203
PHE 330.0101
VAL 340.0111
ILE 350.0074
ARG 360.0098
GLU 370.0080
PRO 380.0078
PHE 390.0087
ILE 400.0090
SER 410.0084
CYS 420.0088
SER 430.0093
HIS 440.0096
LEU 450.0096
GLU 460.0090
CYS 470.0083
ARG 480.0078
THR 490.0071
PHE 500.0069
PHE 510.0062
LEU 520.0061
THR 530.0048
GLN 540.0123
GLY 550.0163
ALA 560.0243
LEU 570.0434
LEU 580.0596
ASN 590.0672
ASP 600.0597
LYS 610.0601
HIS 620.0439
SER 630.0402
ASN 640.0448
GLY 650.0365
THR 660.0318
VAL 670.0284
LYS 680.0227
ASP 690.0154
ARG 700.0122
SER 710.0065
PRO 720.0016
TYR 730.0032
ARG 740.0042
THR 750.0033
LEU 760.0056
MET 770.0041
SER 780.0055
CYS 790.0056
PRO 800.0074
VAL 810.0068
GLY 820.0060
GLU 830.0045
ALA 840.0032
PRO 850.0046
SER 860.0113
PRO 870.0174
TYR 880.0197
ASN 890.0082
SER 900.0061
ARG 910.0045
PHE 920.0044
GLU 930.0071
SER 940.0074
VAL 950.0073
ALA 960.0081
TRP 970.0107
SER 980.0106
ALA 990.0094
SER 1000.0086
ALA 1010.0083
CYS 1020.0079
HIS 1030.0091
ASP 1040.0089
GLY 1050.0089
MET 1060.0108
GLY 1070.0107
TRP 1080.0099
LEU 1090.0094
THR 1100.0099
ILE 1110.0096
GLY 1120.0108
ILE 1130.0117
SER 1140.0133
GLY 1150.0158
PRO 1160.0178
ASP 1170.0180
ASN 1180.0193
GLY 1190.0182
ALA 1200.0157
VAL 1210.0135
ALA 1220.0120
VAL 1230.0128
LEU 1240.0117
LYS 1250.0112
TYR 1260.0115
ASN 1270.0125
GLY 1280.0125
ILE 1290.0153
ILE 1300.0150
THR 1310.0142
ASP 1320.0133
THR 1330.0136
ILE 1340.0118
LYS 1350.0129
SER 1360.0116
TRP 1370.0087
ARG 1380.0077
ASN 1390.0121
ASN 1400.0124
ILE 1410.0131
LEU 1420.0115
ARG 1430.0104
THR 1440.0084
GLN 1450.0070
GLU 1460.0083
SER 1470.0081
GLU 1480.0079
CYS 1490.0067
ALA 1500.0060
CYS 1510.0078
VAL 1520.0083
ASN 1530.0105
GLY 1540.0112
SER 1550.0093
CYS 1560.0078
PHE 1570.0064
THR 1580.0052
ILE 1590.0030
MET 1600.0045
THR 1610.0058
ASP 1620.0064
GLY 1630.0096
PRO 1640.0151
SER 1650.0182
ASN 1660.0213
GLY 1670.0200
GLN 1680.0169
ALA 1690.0099
SER 1700.0053
TYR 1710.0032
LYS 1720.0020
ILE 1730.0031
LEU 1740.0055
LYS 1750.0080
ILE 1760.0101
GLU 1770.0116
LYS 1780.0134
GLY 1790.0123
LYS 1800.0115
VAL 1810.0107
THR 1820.0119
LYS 1830.0094
SER 1840.0060
ILE 1850.0077
GLU 1860.0054
LEU 1870.0073
ASN 1880.0113
ALA 1890.0143
PRO 1900.0185
ASN 1910.0199
TYR 1920.0153
HIS 1930.0124
TYR 1940.0085
GLU 1950.0095
GLU 1960.0090
CYS 1970.0057
SER 1980.0056
CYS 1990.0041
TYR 2000.0048
PRO 2010.0053
ASP 2020.0045
THR 2030.0066
GLY 2040.0079
LYS 2050.0069
VAL 2060.0042
MET 2070.0024
CYS 2080.0026
VAL 2090.0046
CYS 2100.0076
ARG 2110.0115
ASP 2120.0145
ASN 2130.0193
TRP 2140.0215
HIS 2150.0226
GLY 2160.0221
SER 2170.0173
ASN 2180.0145
ARG 2190.0108
PRO 2200.0106
TRP 2210.0078
VAL 2220.0063
SER 2230.0067
PHE 2240.0076
ASP 2250.0092
GLN 2260.0108
ASN 2270.0122
LEU 2280.0092
ASP 2290.0121
TYR 2300.0105
GLN 2310.0118
ILE 2320.0114
GLY 2330.0139
TYR 2340.0131
ILE 2350.0105
CYS 2360.0131
SER 2370.0102
GLY 2380.0136
VAL 2390.0124
PHE 2400.0140
GLY 2410.0103
ASP 2420.0131
ASN 2430.0156
PRO 2440.0181
ARG 2450.0221
PRO 2460.0247
ASN 2470.0266
ASP 2480.0226
GLY 2490.0259
THR 2500.0218
GLY 2510.0180
SER 2520.0187
CYS 2530.0185
GLY 2540.0206
PRO 2550.0219
VAL 2560.0241
SER 2570.0298
SER 2580.0300
ASN 2590.0307
GLY 2600.0291
ALA 2610.0259
ASN 2620.0221
GLY 2630.0161
ILE 2640.0143
LYS 2650.0102
GLY 2660.0088
PHE 2670.0064
SER 2680.0048
PHE 2690.0042
ARG 2700.0035
TYR 2710.0056
ASP 2720.0079
ASN 2730.0087
GLY 2740.0048
VAL 2750.0033
TRP 2760.0059
ILE 2770.0070
GLY 2780.0091
ARG 2790.0111
THR 2800.0141
LYS 2810.0149
SER 2820.0176
THR 2830.0170
SER 2840.0208
SER 2850.0188
ARG 2860.0173
SER 2870.0183
GLY 2880.0174
PHE 2890.0141
GLU 2900.0131
MET 2910.0110
ILE 2920.0097
TRP 2930.0072
ASP 2940.0041
PRO 2950.0042
ASN 2960.0068
GLY 2970.0073
TRP 2980.0090
THR 2990.0131
GLU 3000.0135
THR 3010.0154
ASP 3020.0134
SER 3030.0129
SER 3040.0085
PHE 3050.0070
SER 3060.0086
VAL 3070.0111
ARG 3080.0132
GLN 3090.0138
ASP 3100.0146
ILE 3110.0136
VAL 3120.0143
ALA 3130.0179
ILE 3140.0182
THR 3150.0194
ASP 3160.0171
TRP 3170.0168
SER 3180.0148
GLY 3190.0127
TYR 3200.0110
SER 3210.0095
GLY 3220.0083
SER 3230.0082
PHE 3240.0085
VAL 3250.0077
GLN 3260.0091
HIS 3270.0091
PRO 3280.0097
GLU 3290.0098
LEU 3300.0102
THR 3310.0101
GLY 3320.0105
LEU 3330.0114
ASP 3340.0108
CYS 3350.0094
MET 3360.0085
ARG 3370.0094
PRO 3380.0087
CYS 3390.0092
PHE 3400.0090
TRP 3410.0108
VAL 3420.0107
GLU 3430.0095
LEU 3440.0101
ILE 3450.0090
ARG 3460.0095
GLY 3470.0119
GLN 3480.0157
PRO 3490.0195
LYS 3500.0139
GLU 3510.0098
ASN 3520.0140
THR 3530.0146
ILE 3540.0180
TRP 3550.0145
THR 3560.0099
SER 3570.0057
GLY 3580.0052
SER 3590.0057
SER 3600.0077
ILE 3610.0095
SER 3620.0092
PHE 3630.0100
CYS 3640.0101
GLY 3650.0103
VAL 3660.0114
ASN 3670.0125
SER 3680.0131
ASP 3690.0127
THR 3700.0125
VAL 3710.0128
GLY 3720.0123
TRP 3730.0118
SER 3740.0117
TRP 3750.0116
PRO 3760.0113
ASP 3770.0062
GLY 3780.0049
ALA 3790.0038
GLU 3800.0047
LEU 3810.0052
PRO 3820.0048
PHE 3830.0046
SER 3840.0046
ILE 3850.0049
VAL 3860.0050
ILE 3870.0051
LEU 3880.0055
THR 3890.0062
GLY 3900.0058
ASN 3910.0061
SER 3920.0055
SER 3930.0065
LEU 3940.0056
CYS 3950.0053
PRO 3960.0051
ILE 3970.0047
SER 3980.0044
GLY 3990.0031
TRP 4000.0028
ALA 4010.0034
ILE 4020.0039
TYR 4030.0045
SER 4040.0051
LYS 4050.0048
ASP 4060.0047
ASN 4070.0046
GLY 4080.0046
ILE 4090.0038
ARG 4100.0093
ILE 4110.0167
GLY 4120.0260
SER 4130.0238
LYS 4140.0175
GLY 4150.0191
ASP 4160.0152
VAL 4170.0074
PHE 4180.0061
VAL 4190.0056
ILE 4200.0058
ARG 4210.0062
GLU 4220.0058
PRO 4230.0054
PHE 4240.0051
ILE 4250.0051
SER 4260.0052
CYS 4270.0055
SER 4280.0058
HIS 4290.0060
LEU 4300.0061
GLU 4310.0060
CYS 4320.0058
ARG 4330.0057
THR 4340.0055
PHE 4350.0052
PHE 4360.0050
LEU 4370.0050
THR 4380.0052
GLN 4390.0059
GLY 4400.0070
ALA 4410.0093
LEU 4420.0089
LEU 4430.0072
ASN 4440.0079
ASP 4450.0077
LYS 4460.0067
HIS 4470.0071
SER 4480.0084
ASN 4490.0090
GLY 4500.0087
THR 4510.0079
VAL 4520.0093
LYS 4530.0077
ASP 4540.0067
ARG 4550.0072
SER 4560.0078
PRO 4570.0046
TYR 4580.0043
ARG 4590.0043
THR 4600.0044
LEU 4610.0040
MET 4620.0045
SER 4630.0051
CYS 4640.0058
PRO 4650.0065
VAL 4660.0062
GLY 4670.0068
GLU 4680.0070
ALA 4690.0073
PRO 4700.0061
SER 4710.0070
PRO 4720.0069
TYR 4730.0088
ASN 4740.0079
SER 4750.0052
ARG 4760.0032
PHE 4770.0021
GLU 4780.0032
SER 4790.0036
VAL 4800.0036
ALA 4810.0050
TRP 4820.0052
SER 4830.0052
ALA 4840.0049
SER 4850.0047
ALA 4860.0049
CYS 4870.0048
HIS 4880.0050
ASP 4890.0047
GLY 4900.0049
MET 4910.0050
GLY 4920.0049
TRP 4930.0047
LEU 4940.0043
THR 4950.0042
ILE 4960.0038
GLY 4970.0043
ILE 4980.0047
SER 4990.0050
GLY 5000.0054
PRO 5010.0061
ASP 5020.0063
ASN 5030.0068
GLY 5040.0063
ALA 5050.0051
VAL 5060.0046
ALA 5070.0044
VAL 5080.0036
LEU 5090.0033
LYS 5100.0032
TYR 5110.0031
ASN 5120.0031
GLY 5130.0038
ILE 5140.0039
ILE 5150.0035
THR 5160.0032
ASP 5170.0039
THR 5180.0039
ILE 5190.0043
LYS 5200.0043
SER 5210.0071
TRP 5220.0073
ARG 5230.0073
ASN 5240.0075
ASN 5250.0070
ILE 5260.0067
LEU 5270.0066
ARG 5280.0061
THR 5290.0056
GLN 5300.0047
GLU 5310.0053
SER 5320.0048
GLU 5330.0047
CYS 5340.0051
ALA 5350.0051
CYS 5360.0057
VAL 5370.0055
ASN 5380.0060
GLY 5390.0063
SER 5400.0062
CYS 5410.0059
PHE 5420.0057
THR 5430.0053
ILE 5440.0052
MET 5450.0057
THR 5460.0057
ASP 5470.0064
GLY 5480.0062
PRO 5490.0074
SER 5500.0070
ASN 5510.0062
GLY 5520.0051
GLN 5530.0047
ALA 5540.0055
SER 5550.0062
TYR 5560.0060
LYS 5570.0064
ILE 5580.0062
LEU 5590.0065
LYS 5600.0067
ILE 5610.0042
GLU 5620.0035
LYS 5630.0030
GLY 5640.0038
LYS 5650.0035
VAL 5660.0049
THR 5670.0053
LYS 5680.0071
SER 5690.0088
ILE 5700.0084
GLU 5710.0076
LEU 5720.0067
ASN 5730.0075
ALA 5740.0052
PRO 5750.0045
ASN 5760.0030
TYR 5770.0031
HIS 5780.0036
TYR 5790.0041
GLU 5800.0051
GLU 5810.0052
CYS 5820.0043
SER 5830.0040
CYS 5840.0047
TYR 5850.0053
PRO 5860.0062
ASP 5870.0065
THR 5880.0074
GLY 5890.0076
LYS 5900.0072
VAL 5910.0065
MET 5920.0058
CYS 5930.0050
VAL 5940.0034
CYS 5950.0034
ARG 5960.0038
ASP 5970.0042
ASN 5980.0064
TRP 5990.0058
HIS 6000.0053
GLY 6010.0073
SER 6020.0063
ASN 6030.0047
ARG 6040.0030
PRO 6050.0033
TRP 6060.0043
VAL 6070.0057
SER 6080.0072
PHE 6090.0070
ASP 6100.0076
GLN 6110.0079
ASN 6120.0088
LEU 6130.0084
ASP 6140.0087
TYR 6150.0076
GLN 6160.0071
ILE 6170.0066
GLY 6180.0055
TYR 6190.0048
ILE 6200.0057
CYS 6210.0090
SER 6220.0093
GLY 6230.0108
VAL 6240.0093
PHE 6250.0060
GLY 6260.0040
ASP 6270.0050
ASN 6280.0074
PRO 6290.0085
ARG 6300.0118
PRO 6310.0146
ASN 6320.0147
ASP 6330.0114
GLY 6340.0128
THR 6350.0118
GLY 6360.0091
SER 6370.0089
CYS 6380.0082
GLY 6390.0063
PRO 6400.0051
VAL 6410.0075
SER 6420.0091
SER 6430.0105
ASN 6440.0103
GLY 6450.0100
ALA 6460.0113
ASN 6470.0110
GLY 6480.0076
ILE 6490.0061
LYS 6500.0050
GLY 6510.0034
PHE 6520.0028
SER 6530.0031
PHE 6540.0045
ARG 6550.0066
TYR 6560.0083
ASP 6570.0126
ASN 6580.0123
GLY 6590.0100
VAL 6600.0070
TRP 6610.0045
ILE 6620.0035
GLY 6630.0031
ARG 6640.0045
THR 6650.0048
LYS 6660.0057
SER 6670.0075
THR 6680.0080
SER 6690.0081
SER 6700.0080
ARG 6710.0067
SER 6720.0063
GLY 6730.0064
PHE 6740.0047
GLU 6750.0041
MET 6760.0035
ILE 6770.0063
TRP 6780.0074
ASP 6790.0092
PRO 6800.0112
ASN 6810.0127
GLY 6820.0097
TRP 6830.0100
THR 6840.0130
GLU 6850.0142
THR 6860.0134
ASP 6870.0150
SER 6880.0143
SER 6890.0141
PHE 6900.0112
SER 6910.0110
VAL 6920.0082
ARG 6930.0061
GLN 6940.0044
ASP 6950.0051
ILE 6960.0042
VAL 6970.0042
ALA 6980.0052
ILE 6990.0058
THR 7000.0069
ASP 7010.0052
TRP 7020.0057
SER 7030.0056
GLY 7040.0065
TYR 7050.0059
SER 7060.0048
GLY 7070.0047
SER 7080.0046
PHE 7090.0046
VAL 7100.0048
GLN 7110.0051
HIS 7120.0055
PRO 7130.0053
GLU 7140.0058
LEU 7150.0055
THR 7160.0050
GLY 7170.0054
LEU 7180.0049
ASP 7190.0058
CYS 7200.0054
MET 7210.0055
ARG 7220.0048
PRO 7230.0043
CYS 7240.0041
PHE 7250.0042
TRP 7260.0046
VAL 7270.0046
GLU 7280.0057
LEU 7290.0055
ILE 7300.0067
ARG 7310.0056
GLY 7320.0079
GLN 7330.0137
PRO 7340.0146
LYS 7350.0131
GLU 7360.0138
ASN 7370.0186
THR 7380.0121
ILE 7390.0108
TRP 7400.0085
THR 7410.0060
SER 7420.0057
GLY 7430.0044
SER 7440.0043
SER 7450.0052
ILE 7460.0046
SER 7470.0044
PHE 7480.0038
CYS 7490.0041
GLY 7500.0037
VAL 7510.0040
ASN 7520.0049
SER 7530.0043
ASP 7540.0037
THR 7550.0029
VAL 7560.0030
GLY 7570.0029
TRP 7580.0031
SER 7590.0036
TRP 7600.0042
PRO 7610.0047
ASP 7620.0051
GLY 7630.0045
ALA 7640.0048
GLU 7650.0148
LEU 7660.0220
PRO 7670.0336
PHE 7680.0446
SER 7690.0814
ILE 7700.0519

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.