CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  EXP_1TME_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000  ***

CA strain for 24021912501950589

---  normal mode 15  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
SER 1GLY 2 0.3054
GLY 2ASN 3 -0.1572
ASN 3GLU 4 0.0990
GLU 4GLY 5 -0.3422
GLY 5VAL 6 -0.1854
VAL 6ILE 7 -0.0916
ILE 7ILE 8 -0.2306
ILE 8ASN 9 0.1424
ASN 9ASN 10 -0.2506
ASN 10PHE 11 -0.3251
PHE 11TYR 12 0.3482
TYR 12SER 13 -0.0588
SER 13ASN 14 -0.2668
ASN 14GLN 15 0.1582
GLN 15TYR 16 -0.0537
TYR 16GLN 17 0.0255
GLN 17ASN 18 -0.0882
ASN 18SER 19 -0.4044
SER 19ILE 20 -0.1512
ILE 20ASP 21 -0.1208
ASP 21LEU 22 -0.6192
LEU 22SER 23 -0.1678
SER 23ALA 24 -0.0231
ALA 24SER 25 -0.0084

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.