Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *

CA strain for 240110225555577823

--- normal mode 9 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
PRO 3 LEU 4 -0.0001

LEU 4 CYS 5 0.0169

CYS 5 ALA 6 -0.0001

ALA 6 ASN 7 -0.0102

ASN 7 LEU 8 0.0003

LEU 8 VAL 9 -0.0026

VAL 9 PRO 10 -0.0002

PRO 10 VAL 11 -0.0092

VAL 11 PRO 12 0.0001

PRO 12 ILE 13 0.0079

ILE 13 THR 14 -0.0003

THR 14 ASN 15 0.0037

ASN 15 ALA 16 0.0003

ALA 16 THR 17 0.0144

THR 17 LEU 18 -0.0002

LEU 18 ASP 19 0.0057

ASP 19 ARG 20 0.0001

ARG 20 ILE 21 0.0042

ILE 21 THR 22 0.0004

THR 22 GLY 23 -0.1016

GLY 23 LYS 24 -0.0000

LYS 24 TRP 25 -0.0025

TRP 25 PHE 26 0.0001

PHE 26 TYR 27 0.0122

TYR 27 ILE 28 -0.0002

ILE 28 ALA 29 0.0269

ALA 29 SER 30 -0.0000

SER 30 ALA 31 0.0027

ALA 31 PHE 32 0.0002

PHE 32 ARG 33 0.0024

ARG 33 ASN 34 -0.0002

ASN 34 GLU 35 -0.0043

GLU 35 GLU 36 0.0000

GLU 36 TYR 37 -0.0222

TYR 37 ASN 38 0.0000

ASN 38 LYS 39 -0.0276

LYS 39 SER 40 0.0001

SER 40 VAL 41 -0.0829

VAL 41 GLN 42 0.0002

GLN 42 GLU 43 -0.0706

GLU 43 ILE 44 0.0002

ILE 44 GLN 45 0.0366

GLN 45 ALA 46 0.0003

ALA 46 THR 47 0.0395

THR 47 PHE 48 -0.0001

PHE 48 PHE 49 0.0381

PHE 49 TYR 50 -0.0001

TYR 50 PHE 51 -0.0504

PHE 51 THR 52 0.0002

THR 52 PRO 53 -0.0501

PRO 53 ASN 54 -0.0002

ASN 54 LYS 55 0.0636

LYS 55 THR 56 0.0001

THR 56 GLU 57 0.0170

GLU 57 ASP 58 0.0004

ASP 58 THR 59 0.0124

THR 59 ILE 60 -0.0002

ILE 60 PHE 61 -0.0364

PHE 61 LEU 62 0.0002

LEU 62 ARG 63 -0.0167

ARG 63 GLU 64 0.0001

GLU 64 TYR 65 0.0663

TYR 65 GLN 66 -0.0003

GLN 66 THR 67 0.0611

THR 67 ARG 68 0.0002

ARG 68 GLN 69 0.0274

GLN 69 ASN 70 -0.0002

ASN 70 GLN 71 -0.0771

GLN 71 CYS 72 -0.0002

CYS 72 PHE 73 0.0061

PHE 73 TYR 74 0.0001

TYR 74 ASN 75 0.0462

ASN 75 SER 76 -0.0003

SER 76 SER 77 0.0354

SER 77 TYR 78 0.0002

TYR 78 LEU 79 0.0946

LEU 79 ASN 80 -0.0001

ASN 80 VAL 81 0.1393

VAL 81 GLN 82 0.0000

GLN 82 ARG 83 0.0027

ARG 83 GLU 84 0.0001

GLU 84 ASN 85 -0.0024

ASN 85 GLY 86 0.0000

GLY 86 THR 87 0.0257

THR 87 VAL 88 -0.0000

VAL 88 SER 89 0.0737

SER 89 ARG 90 0.0001

ARG 90 TYR 91 0.1507

TYR 91 GLU 92 0.0002

GLU 92 GLY 93 0.0211

GLY 93 GLY 94 -0.0001

GLY 94 ARG 95 0.0709

ARG 95 GLU 96 -0.0003

GLU 96 HIS 97 0.0729

HIS 97 VAL 98 0.0001

VAL 98 ALA 99 0.0777

ALA 99 HIS 100 0.0001

HIS 100 LEU 101 -0.0137

LEU 101 LEU 102 -0.0001

LEU 102 PHE 103 0.0146

PHE 103 LEU 104 -0.0001

LEU 104 ARG 105 0.0021

ARG 105 ASP 106 0.0000

ASP 106 THR 107 0.0353

THR 107 LYS 108 0.0000

LYS 108 THR 109 0.0083

THR 109 LEU 110 0.0002

LEU 110 MET 111 0.0033

MET 111 PHE 112 0.0003

PHE 112 GLY 113 -0.0337

GLY 113 SER 114 -0.0000

SER 114 TYR 115 -0.0097

TYR 115 LEU 116 -0.0002

LEU 116 ASP 117 -0.0036

ASP 117 ASP 118 0.0003

ASP 118 GLU 119 -0.0011

GLU 119 LYS 120 -0.0002

LYS 120 ASN 121 0.0005

ASN 121 TRP 122 -0.0002

TRP 122 GLY 123 -0.0047

GLY 123 LEU 124 -0.0001

LEU 124 SER 125 -0.0146

SER 125 PHE 126 -0.0001

PHE 126 TYR 127 0.0022

TYR 127 ALA 128 -0.0003

ALA 128 ASP 129 0.0121

ASP 129 LYS 130 -0.0002

LYS 130 PRO 131 -0.0309

PRO 131 GLU 132 0.0000

GLU 132 THR 133 -0.0980

THR 133 THR 134 -0.0002

THR 134 LYS 135 -0.0073

LYS 135 GLU 136 0.0000

GLU 136 GLN 137 0.0252

GLN 137 LEU 138 0.0000

LEU 138 GLY 139 -0.0120

GLY 139 GLU 140 -0.0001

GLU 140 PHE 141 -0.0148

PHE 141 TYR 142 -0.0001

TYR 142 GLU 143 -0.0430

GLU 143 ALA 144 0.0000

ALA 144 LEU 145 0.0001

LEU 145 ASP 146 0.0003

ASP 146 CYS 147 0.0010

CYS 147 LEU 148 -0.0001

LEU 148 ARG 149 0.0063

ARG 149 ILE 150 0.0003

ILE 150 PRO 151 0.0060

PRO 151 ARG 152 0.0002

ARG 152 SER 153 0.0117

SER 153 ASP 154 -0.0001

ASP 154 VAL 155 0.0080

VAL 155 MET 156 0.0003

MET 156 TYR 157 0.0498

TYR 157 THR 158 -0.0002

THR 158 ASP 159 0.0408

ASP 159 TRP 160 -0.0003

TRP 160 LYS 161 0.0042

LYS 161 LYS 162 0.0002

LYS 162 ASP 163 0.0193

ASP 163 LYS 164 -0.0001

LYS 164 CYS 165 0.0264

CYS 165 GLU 166 0.0000

GLU 166 PRO 167 -0.0461

PRO 167 LEU 168 0.0001

LEU 168 GLU 169 -0.0430

GLU 169 LYS 170 0.0001

LYS 170 GLN 171 -0.1728

GLN 171 HIS 172 0.0004

HIS 172 PRO 3 -0.0293

PRO 3 LEU 4 -0.0003

LEU 4 CYS 5 -0.0326

CYS 5 ALA 6 0.0002

ALA 6 ASN 7 0.0178

ASN 7 LEU 8 -0.0002

LEU 8 VAL 9 0.0040

VAL 9 PRO 10 -0.0005

PRO 10 VAL 11 0.0187

VAL 11 PRO 12 0.0001

PRO 12 ILE 13 -0.0065

ILE 13 THR 14 -0.0001

THR 14 ASN 15 0.0007

ASN 15 ALA 16 0.0002

ALA 16 THR 17 -0.0100

THR 17 LEU 18 -0.0001

LEU 18 ASP 19 -0.0024

ASP 19 ARG 20 0.0001

ARG 20 ILE 21 -0.0018

ILE 21 THR 22 -0.0001

THR 22 GLY 23 0.0764

GLY 23 LYS 24 0.0003

LYS 24 TRP 25 0.0145

TRP 25 PHE 26 0.0000

PHE 26 TYR 27 -0.0014

TYR 27 ILE 28 0.0003

ILE 28 ALA 29 -0.0138

ALA 29 SER 30 0.0000

SER 30 ALA 31 0.0080

ALA 31 PHE 32 0.0002

PHE 32 ARG 33 0.0089

ARG 33 ASN 34 0.0004

ASN 34 GLU 35 -0.0010

GLU 35 GLU 36 -0.0004

GLU 36 TYR 37 0.0222

TYR 37 ASN 38 -0.0001

ASN 38 LYS 39 0.0087

LYS 39 SER 40 0.0001

SER 40 VAL 41 0.0565

VAL 41 GLN 42 0.0000

GLN 42 GLU 43 0.0435

GLU 43 ILE 44 -0.0001

ILE 44 GLN 45 -0.0341

GLN 45 ALA 46 0.0001

ALA 46 THR 47 -0.0395

THR 47 PHE 48 -0.0002

PHE 48 PHE 49 -0.0403

PHE 49 TYR 50 -0.0000

TYR 50 PHE 51 0.0454

PHE 51 THR 52 -0.0001

THR 52 PRO 53 0.0359

PRO 53 ASN 54 -0.0003

ASN 54 LYS 55 -0.0460

LYS 55 THR 56 0.0002

THR 56 GLU 57 -0.0137

GLU 57 ASP 58 0.0000

ASP 58 THR 59 -0.0126

THR 59 ILE 60 0.0000

ILE 60 PHE 61 0.0492

PHE 61 LEU 62 0.0002

LEU 62 ARG 63 0.0271

ARG 63 GLU 64 0.0001

GLU 64 TYR 65 -0.0703

TYR 65 GLN 66 0.0001

GLN 66 THR 67 -0.0551

THR 67 ARG 68 0.0000

ARG 68 GLN 69 -0.0171

GLN 69 ASN 70 -0.0001

ASN 70 GLN 71 0.0289

GLN 71 CYS 72 0.0000

CYS 72 PHE 73 0.0081

PHE 73 TYR 74 -0.0001

TYR 74 ASN 75 -0.0106

ASN 75 SER 76 -0.0001

SER 76 SER 77 -0.0335

SER 77 TYR 78 0.0005

TYR 78 LEU 79 -0.0866

LEU 79 ASN 80 0.0004

ASN 80 VAL 81 -0.1538

VAL 81 GLN 82 -0.0005

GLN 82 ARG 83 -0.0044

ARG 83 GLU 84 -0.0001

GLU 84 ASN 85 0.0051

ASN 85 GLY 86 -0.0002

GLY 86 THR 87 -0.0265

THR 87 VAL 88 0.0002

VAL 88 SER 89 -0.1012

SER 89 ARG 90 0.0002

ARG 90 TYR 91 -0.1863

TYR 91 GLU 92 0.0002

GLU 92 GLY 93 -0.0386

GLY 93 GLY 94 0.0000

GLY 94 ARG 95 -0.1427

ARG 95 GLU 96 -0.0003

GLU 96 HIS 97 -0.0987

HIS 97 VAL 98 -0.0001

VAL 98 ALA 99 -0.1035

ALA 99 HIS 100 0.0002

HIS 100 LEU 101 0.0107

LEU 101 LEU 102 -0.0000

LEU 102 PHE 103 -0.0333

PHE 103 LEU 104 0.0000

LEU 104 ARG 105 -0.0123

ARG 105 ASP 106 -0.0001

ASP 106 THR 107 -0.0283

THR 107 LYS 108 0.0000

LYS 108 THR 109 -0.0108

THR 109 LEU 110 0.0002

LEU 110 MET 111 -0.0038

MET 111 PHE 112 0.0002

PHE 112 GLY 113 0.0424

GLY 113 SER 114 0.0001

SER 114 TYR 115 0.0087

TYR 115 LEU 116 -0.0003

LEU 116 ASP 117 0.0085

ASP 117 ASP 118 0.0002

ASP 118 GLU 119 -0.0030

GLU 119 LYS 120 0.0002

LYS 120 ASN 121 -0.0068

ASN 121 TRP 122 -0.0001

TRP 122 GLY 123 0.0110

GLY 123 LEU 124 0.0000

LEU 124 SER 125 0.0229

SER 125 PHE 126 -0.0002

PHE 126 TYR 127 0.0131

TYR 127 ALA 128 0.0001

ALA 128 ASP 129 -0.0064

ASP 129 LYS 130 0.0001

LYS 130 PRO 131 0.0101

PRO 131 GLU 132 -0.0002

GLU 132 THR 133 0.1009

THR 133 THR 134 0.0003

THR 134 LYS 135 0.0152

LYS 135 GLU 136 0.0002

GLU 136 GLN 137 -0.0223

GLN 137 LEU 138 0.0002

LEU 138 GLY 139 0.0195

GLY 139 GLU 140 -0.0001

GLU 140 PHE 141 0.0084

PHE 141 TYR 142 0.0001

TYR 142 GLU 143 0.0435

GLU 143 ALA 144 0.0000

ALA 144 LEU 145 -0.0031

LEU 145 ASP 146 -0.0000

ASP 146 CYS 147 -0.0022

CYS 147 LEU 148 0.0002

LEU 148 ARG 149 -0.0058

ARG 149 ILE 150 0.0002

ILE 150 PRO 151 -0.0058

PRO 151 ARG 152 -0.0003

ARG 152 SER 153 -0.0167

SER 153 ASP 154 -0.0001

ASP 154 VAL 155 -0.0033

VAL 155 MET 156 0.0001

MET 156 TYR 157 -0.0377

TYR 157 THR 158 -0.0001

THR 158 ASP 159 -0.0317

ASP 159 TRP 160 -0.0001

TRP 160 LYS 161 -0.0074

LYS 161 LYS 162 0.0002

LYS 162 ASP 163 -0.0142

ASP 163 LYS 164 -0.0001

LYS 164 CYS 165 -0.0129

CYS 165 GLU 166 0.0003

GLU 166 PRO 167 0.0477

PRO 167 LEU 168 -0.0001

LEU 168 GLU 169 0.0611

GLU 169 LYS 170 0.0002

LYS 170 GLN 171 0.1218

GLN 171 HIS 172 0.0001

HIS 172 GLU 173 0.0159

GLU 173 LYS 174 -0.0000

LYS 174 GLU 175 -0.0122

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APV ***

CA strain for 240110225555577823

--- normal mode 9 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *