Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *

CA strain for 240110225555577823

--- normal mode 8 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
PRO 3 LEU 4 -0.0001

LEU 4 CYS 5 -0.0060

CYS 5 ALA 6 0.0003

ALA 6 ASN 7 -0.0030

ASN 7 LEU 8 0.0000

LEU 8 VAL 9 -0.0045

VAL 9 PRO 10 0.0004

PRO 10 VAL 11 0.0003

VAL 11 PRO 12 -0.0001

PRO 12 ILE 13 -0.0096

ILE 13 THR 14 -0.0001

THR 14 ASN 15 0.0057

ASN 15 ALA 16 -0.0003

ALA 16 THR 17 0.0070

THR 17 LEU 18 -0.0002

LEU 18 ASP 19 0.0108

ASP 19 ARG 20 -0.0001

ARG 20 ILE 21 -0.0015

ILE 21 THR 22 0.0000

THR 22 GLY 23 -0.0724

GLY 23 LYS 24 0.0002

LYS 24 TRP 25 0.0104

TRP 25 PHE 26 -0.0002

PHE 26 TYR 27 0.0147

TYR 27 ILE 28 -0.0000

ILE 28 ALA 29 0.0180

ALA 29 SER 30 -0.0001

SER 30 ALA 31 0.0308

ALA 31 PHE 32 -0.0001

PHE 32 ARG 33 0.0278

ARG 33 ASN 34 -0.0003

ASN 34 GLU 35 0.0244

GLU 35 GLU 36 -0.0001

GLU 36 TYR 37 0.0013

TYR 37 ASN 38 0.0002

ASN 38 LYS 39 0.0086

LYS 39 SER 40 0.0000

SER 40 VAL 41 -0.0347

VAL 41 GLN 42 -0.0003

GLN 42 GLU 43 0.0226

GLU 43 ILE 44 0.0000

ILE 44 GLN 45 0.0077

GLN 45 ALA 46 0.0002

ALA 46 THR 47 -0.0050

THR 47 PHE 48 -0.0003

PHE 48 PHE 49 -0.0004

PHE 49 TYR 50 0.0003

TYR 50 PHE 51 -0.0304

PHE 51 THR 52 -0.0002

THR 52 PRO 53 -0.0347

PRO 53 ASN 54 -0.0001

ASN 54 LYS 55 -0.0151

LYS 55 THR 56 -0.0001

THR 56 GLU 57 0.0273

GLU 57 ASP 58 -0.0000

ASP 58 THR 59 -0.0097

THR 59 ILE 60 -0.0001

ILE 60 PHE 61 -0.0258

PHE 61 LEU 62 0.0000

LEU 62 ARG 63 -0.0148

ARG 63 GLU 64 0.0003

GLU 64 TYR 65 -0.0076

TYR 65 GLN 66 -0.0002

GLN 66 THR 67 0.0247

THR 67 ARG 68 0.0001

ARG 68 GLN 69 0.0182

GLN 69 ASN 70 -0.0002

ASN 70 GLN 71 0.0231

GLN 71 CYS 72 0.0002

CYS 72 PHE 73 -0.0389

PHE 73 TYR 74 0.0003

TYR 74 ASN 75 0.0168

ASN 75 SER 76 -0.0001

SER 76 SER 77 0.0030

SER 77 TYR 78 -0.0002

TYR 78 LEU 79 -0.0710

LEU 79 ASN 80 0.0001

ASN 80 VAL 81 0.0316

VAL 81 GLN 82 -0.0002

GLN 82 ARG 83 0.0655

ARG 83 GLU 84 -0.0000

GLU 84 ASN 85 -0.0190

ASN 85 GLY 86 -0.0001

GLY 86 THR 87 0.0157

THR 87 VAL 88 0.0002

VAL 88 SER 89 0.0304

SER 89 ARG 90 -0.0000

ARG 90 TYR 91 0.1011

TYR 91 GLU 92 -0.0002

GLU 92 GLY 93 -0.0130

GLY 93 GLY 94 0.0000

GLY 94 ARG 95 0.0177

ARG 95 GLU 96 0.0001

GLU 96 HIS 97 -0.0760

HIS 97 VAL 98 0.0001

VAL 98 ALA 99 -0.0389

ALA 99 HIS 100 0.0001

HIS 100 LEU 101 -0.0046

LEU 101 LEU 102 -0.0001

LEU 102 PHE 103 -0.0118

PHE 103 LEU 104 -0.0002

LEU 104 ARG 105 -0.0044

ARG 105 ASP 106 0.0001

ASP 106 THR 107 0.0205

THR 107 LYS 108 0.0002

LYS 108 THR 109 -0.0001

THR 109 LEU 110 0.0002

LEU 110 MET 111 -0.0026

MET 111 PHE 112 0.0002

PHE 112 GLY 113 0.0166

GLY 113 SER 114 -0.0002

SER 114 TYR 115 -0.0039

TYR 115 LEU 116 -0.0003

LEU 116 ASP 117 -0.0031

ASP 117 ASP 118 0.0001

ASP 118 GLU 119 -0.0007

GLU 119 LYS 120 0.0002

LYS 120 ASN 121 -0.0126

ASN 121 TRP 122 -0.0001

TRP 122 GLY 123 0.0088

GLY 123 LEU 124 0.0002

LEU 124 SER 125 0.0225

SER 125 PHE 126 0.0001

PHE 126 TYR 127 0.0184

TYR 127 ALA 128 0.0001

ALA 128 ASP 129 0.0066

ASP 129 LYS 130 -0.0001

LYS 130 PRO 131 -0.0400

PRO 131 GLU 132 0.0003

GLU 132 THR 133 -0.0153

THR 133 THR 134 -0.0002

THR 134 LYS 135 0.0103

LYS 135 GLU 136 0.0002

GLU 136 GLN 137 0.0118

GLN 137 LEU 138 -0.0001

LEU 138 GLY 139 0.0093

GLY 139 GLU 140 0.0000

GLU 140 PHE 141 -0.0082

PHE 141 TYR 142 -0.0003

TYR 142 GLU 143 0.0037

GLU 143 ALA 144 0.0003

ALA 144 LEU 145 -0.0002

LEU 145 ASP 146 -0.0000

ASP 146 CYS 147 0.0009

CYS 147 LEU 148 -0.0002

LEU 148 ARG 149 0.0016

ARG 149 ILE 150 -0.0000

ILE 150 PRO 151 -0.0128

PRO 151 ARG 152 -0.0000

ARG 152 SER 153 -0.0069

SER 153 ASP 154 0.0000

ASP 154 VAL 155 0.0254

VAL 155 MET 156 0.0003

MET 156 TYR 157 0.0211

TYR 157 THR 158 -0.0000

THR 158 ASP 159 0.0248

ASP 159 TRP 160 0.0003

TRP 160 LYS 161 -0.0122

LYS 161 LYS 162 -0.0002

LYS 162 ASP 163 0.0489

ASP 163 LYS 164 -0.0002

LYS 164 CYS 165 0.0455

CYS 165 GLU 166 0.0003

GLU 166 PRO 167 0.0274

PRO 167 LEU 168 0.0001

LEU 168 GLU 169 -0.0099

GLU 169 LYS 170 0.0000

LYS 170 GLN 171 -0.0667

GLN 171 HIS 172 -0.0001

HIS 172 PRO 3 0.0275

PRO 3 LEU 4 0.0000

LEU 4 CYS 5 0.0004

CYS 5 ALA 6 -0.0001

ALA 6 ASN 7 -0.0067

ASN 7 LEU 8 0.0001

LEU 8 VAL 9 -0.0005

VAL 9 PRO 10 -0.0002

PRO 10 VAL 11 -0.0046

VAL 11 PRO 12 0.0005

PRO 12 ILE 13 -0.0082

ILE 13 THR 14 -0.0000

THR 14 ASN 15 0.0036

ASN 15 ALA 16 -0.0001

ALA 16 THR 17 0.0066

THR 17 LEU 18 0.0001

LEU 18 ASP 19 0.0082

ASP 19 ARG 20 -0.0004

ARG 20 ILE 21 -0.0025

ILE 21 THR 22 0.0001

THR 22 GLY 23 -0.0698

GLY 23 LYS 24 -0.0000

LYS 24 TRP 25 0.0028

TRP 25 PHE 26 -0.0001

PHE 26 TYR 27 0.0156

TYR 27 ILE 28 0.0000

ILE 28 ALA 29 0.0173

ALA 29 SER 30 -0.0001

SER 30 ALA 31 0.0305

ALA 31 PHE 32 -0.0002

PHE 32 ARG 33 0.0206

ARG 33 ASN 34 -0.0003

ASN 34 GLU 35 0.0148

GLU 35 GLU 36 -0.0001

GLU 36 TYR 37 0.0013

TYR 37 ASN 38 0.0002

ASN 38 LYS 39 0.0084

LYS 39 SER 40 0.0001

SER 40 VAL 41 -0.0394

VAL 41 GLN 42 0.0001

GLN 42 GLU 43 0.0324

GLU 43 ILE 44 -0.0002

ILE 44 GLN 45 0.0062

GLN 45 ALA 46 0.0000

ALA 46 THR 47 0.0006

THR 47 PHE 48 -0.0000

PHE 48 PHE 49 0.0008

PHE 49 TYR 50 -0.0001

TYR 50 PHE 51 -0.0374

PHE 51 THR 52 0.0001

THR 52 PRO 53 -0.0303

PRO 53 ASN 54 -0.0000

ASN 54 LYS 55 0.0031

LYS 55 THR 56 0.0003

THR 56 GLU 57 0.0177

GLU 57 ASP 58 -0.0005

ASP 58 THR 59 -0.0130

THR 59 ILE 60 -0.0002

ILE 60 PHE 61 -0.0438

PHE 61 LEU 62 0.0001

LEU 62 ARG 63 -0.0385

ARG 63 GLU 64 0.0001

GLU 64 TYR 65 0.0042

TYR 65 GLN 66 0.0002

GLN 66 THR 67 0.0300

THR 67 ARG 68 0.0000

ARG 68 GLN 69 -0.0159

GLN 69 ASN 70 -0.0003

ASN 70 GLN 71 0.0364

GLN 71 CYS 72 0.0001

CYS 72 PHE 73 -0.0461

PHE 73 TYR 74 -0.0001

TYR 74 ASN 75 0.0017

ASN 75 SER 76 0.0002

SER 76 SER 77 0.0104

SER 77 TYR 78 -0.0002

TYR 78 LEU 79 -0.0533

LEU 79 ASN 80 0.0001

ASN 80 VAL 81 0.0616

VAL 81 GLN 82 -0.0001

GLN 82 ARG 83 0.0708

ARG 83 GLU 84 0.0002

GLU 84 ASN 85 -0.0212

ASN 85 GLY 86 -0.0003

GLY 86 THR 87 0.0202

THR 87 VAL 88 -0.0003

VAL 88 SER 89 0.0400

SER 89 ARG 90 -0.0004

ARG 90 TYR 91 0.1166

TYR 91 GLU 92 -0.0000

GLU 92 GLY 93 -0.0386

GLY 93 GLY 94 0.0004

GLY 94 ARG 95 -0.0508

ARG 95 GLU 96 0.0001

GLU 96 HIS 97 -0.0671

HIS 97 VAL 98 0.0004

VAL 98 ALA 99 -0.0176

ALA 99 HIS 100 -0.0002

HIS 100 LEU 101 -0.0059

LEU 101 LEU 102 -0.0001

LEU 102 PHE 103 -0.0069

PHE 103 LEU 104 -0.0002

LEU 104 ARG 105 -0.0051

ARG 105 ASP 106 0.0000

ASP 106 THR 107 0.0241

THR 107 LYS 108 -0.0002

LYS 108 THR 109 -0.0006

THR 109 LEU 110 -0.0001

LEU 110 MET 111 -0.0036

MET 111 PHE 112 0.0003

PHE 112 GLY 113 0.0150

GLY 113 SER 114 -0.0002

SER 114 TYR 115 -0.0058

TYR 115 LEU 116 0.0000

LEU 116 ASP 117 0.0056

ASP 117 ASP 118 0.0001

ASP 118 GLU 119 -0.0117

GLU 119 LYS 120 0.0001

LYS 120 ASN 121 -0.0106

ASN 121 TRP 122 0.0002

TRP 122 GLY 123 0.0069

GLY 123 LEU 124 -0.0001

LEU 124 SER 125 0.0211

SER 125 PHE 126 0.0000

PHE 126 TYR 127 0.0152

TYR 127 ALA 128 -0.0002

ALA 128 ASP 129 0.0028

ASP 129 LYS 130 0.0001

LYS 130 PRO 131 -0.0296

PRO 131 GLU 132 -0.0000

GLU 132 THR 133 -0.0349

THR 133 THR 134 -0.0002

THR 134 LYS 135 0.0148

LYS 135 GLU 136 -0.0002

GLU 136 GLN 137 0.0112

GLN 137 LEU 138 0.0002

LEU 138 GLY 139 0.0043

GLY 139 GLU 140 0.0001

GLU 140 PHE 141 -0.0074

PHE 141 TYR 142 0.0001

TYR 142 GLU 143 0.0036

GLU 143 ALA 144 -0.0001

ALA 144 LEU 145 0.0031

LEU 145 ASP 146 0.0001

ASP 146 CYS 147 0.0039

CYS 147 LEU 148 0.0001

LEU 148 ARG 149 0.0008

ARG 149 ILE 150 -0.0002

ILE 150 PRO 151 -0.0137

PRO 151 ARG 152 0.0003

ARG 152 SER 153 -0.0062

SER 153 ASP 154 -0.0001

ASP 154 VAL 155 0.0234

VAL 155 MET 156 0.0001

MET 156 TYR 157 0.0204

TYR 157 THR 158 -0.0000

THR 158 ASP 159 0.0353

ASP 159 TRP 160 0.0002

TRP 160 LYS 161 0.0008

LYS 161 LYS 162 0.0003

LYS 162 ASP 163 0.0458

ASP 163 LYS 164 -0.0002

LYS 164 CYS 165 0.0592

CYS 165 GLU 166 0.0003

GLU 166 PRO 167 0.0247

PRO 167 LEU 168 0.0000

LEU 168 GLU 169 -0.0195

GLU 169 LYS 170 0.0002

LYS 170 GLN 171 -0.0319

GLN 171 HIS 172 -0.0002

HIS 172 GLU 173 0.0167

GLU 173 LYS 174 0.0003

LYS 174 GLU 175 -0.0112

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APV ***

CA strain for 240110225555577823

--- normal mode 8 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *