Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *

CA strain for 240110225555577823

--- normal mode 7 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
PRO 3 LEU 4 0.0002

LEU 4 CYS 5 0.0077

CYS 5 ALA 6 0.0001

ALA 6 ASN 7 -0.0160

ASN 7 LEU 8 -0.0001

LEU 8 VAL 9 -0.0204

VAL 9 PRO 10 -0.0001

PRO 10 VAL 11 -0.0231

VAL 11 PRO 12 0.0000

PRO 12 ILE 13 -0.0135

ILE 13 THR 14 -0.0000

THR 14 ASN 15 -0.0113

ASN 15 ALA 16 0.0004

ALA 16 THR 17 -0.0093

THR 17 LEU 18 -0.0004

LEU 18 ASP 19 0.0022

ASP 19 ARG 20 -0.0001

ARG 20 ILE 21 -0.0053

ILE 21 THR 22 0.0002

THR 22 GLY 23 -0.0006

GLY 23 LYS 24 -0.0000

LYS 24 TRP 25 -0.0228

TRP 25 PHE 26 0.0001

PHE 26 TYR 27 -0.0142

TYR 27 ILE 28 -0.0002

ILE 28 ALA 29 -0.0244

ALA 29 SER 30 0.0001

SER 30 ALA 31 -0.0217

ALA 31 PHE 32 -0.0001

PHE 32 ARG 33 -0.0220

ARG 33 ASN 34 -0.0002

ASN 34 GLU 35 0.0219

GLU 35 GLU 36 -0.0002

GLU 36 TYR 37 -0.0055

TYR 37 ASN 38 -0.0001

ASN 38 LYS 39 0.0379

LYS 39 SER 40 -0.0001

SER 40 VAL 41 0.1114

VAL 41 GLN 42 -0.0003

GLN 42 GLU 43 0.0609

GLU 43 ILE 44 -0.0001

ILE 44 GLN 45 0.0087

GLN 45 ALA 46 0.0002

ALA 46 THR 47 -0.0072

THR 47 PHE 48 0.0001

PHE 48 PHE 49 0.0149

PHE 49 TYR 50 -0.0004

TYR 50 PHE 51 0.0134

PHE 51 THR 52 -0.0002

THR 52 PRO 53 0.0010

PRO 53 ASN 54 0.0002

ASN 54 LYS 55 -0.0600

LYS 55 THR 56 0.0005

THR 56 GLU 57 0.0061

GLU 57 ASP 58 -0.0005

ASP 58 THR 59 0.0032

THR 59 ILE 60 0.0001

ILE 60 PHE 61 -0.0366

PHE 61 LEU 62 0.0001

LEU 62 ARG 63 0.0121

ARG 63 GLU 64 0.0001

GLU 64 TYR 65 0.0070

TYR 65 GLN 66 0.0003

GLN 66 THR 67 -0.0308

THR 67 ARG 68 0.0001

ARG 68 GLN 69 -0.0120

GLN 69 ASN 70 0.0000

ASN 70 GLN 71 0.0032

GLN 71 CYS 72 0.0002

CYS 72 PHE 73 -0.0159

PHE 73 TYR 74 0.0001

TYR 74 ASN 75 -0.0242

ASN 75 SER 76 -0.0003

SER 76 SER 77 -0.0093

SER 77 TYR 78 0.0003

TYR 78 LEU 79 -0.0272

LEU 79 ASN 80 -0.0002

ASN 80 VAL 81 0.0638

VAL 81 GLN 82 -0.0001

GLN 82 ARG 83 0.0488

ARG 83 GLU 84 -0.0000

GLU 84 ASN 85 -0.0279

ASN 85 GLY 86 0.0001

GLY 86 THR 87 0.0483

THR 87 VAL 88 0.0004

VAL 88 SER 89 0.1029

SER 89 ARG 90 -0.0001

ARG 90 TYR 91 0.1768

TYR 91 GLU 92 0.0001

GLU 92 GLY 93 0.0166

GLY 93 GLY 94 -0.0002

GLY 94 ARG 95 0.2324

ARG 95 GLU 96 -0.0001

GLU 96 HIS 97 0.0726

HIS 97 VAL 98 0.0001

VAL 98 ALA 99 0.1151

ALA 99 HIS 100 0.0002

HIS 100 LEU 101 0.0094

LEU 101 LEU 102 0.0001

LEU 102 PHE 103 0.0394

PHE 103 LEU 104 -0.0002

LEU 104 ARG 105 0.0182

ARG 105 ASP 106 0.0003

ASP 106 THR 107 -0.0025

THR 107 LYS 108 0.0001

LYS 108 THR 109 0.0102

THR 109 LEU 110 -0.0000

LEU 110 MET 111 -0.0036

MET 111 PHE 112 0.0002

PHE 112 GLY 113 -0.0209

GLY 113 SER 114 0.0006

SER 114 TYR 115 -0.0017

TYR 115 LEU 116 0.0001

LEU 116 ASP 117 -0.0025

ASP 117 ASP 118 0.0002

ASP 118 GLU 119 -0.0038

GLU 119 LYS 120 0.0004

LYS 120 ASN 121 0.0119

ASN 121 TRP 122 -0.0001

TRP 122 GLY 123 -0.0142

GLY 123 LEU 124 -0.0003

LEU 124 SER 125 -0.0180

SER 125 PHE 126 -0.0000

PHE 126 TYR 127 -0.0229

TYR 127 ALA 128 -0.0003

ALA 128 ASP 129 -0.0035

ASP 129 LYS 130 -0.0000

LYS 130 PRO 131 0.0163

PRO 131 GLU 132 -0.0002

GLU 132 THR 133 -0.0399

THR 133 THR 134 0.0003

THR 134 LYS 135 -0.0101

LYS 135 GLU 136 -0.0003

GLU 136 GLN 137 -0.0001

GLN 137 LEU 138 -0.0002

LEU 138 GLY 139 -0.0107

GLY 139 GLU 140 -0.0005

GLU 140 PHE 141 0.0168

PHE 141 TYR 142 0.0003

TYR 142 GLU 143 0.0075

GLU 143 ALA 144 -0.0003

ALA 144 LEU 145 0.0018

LEU 145 ASP 146 -0.0004

ASP 146 CYS 147 0.0092

CYS 147 LEU 148 0.0001

LEU 148 ARG 149 -0.0122

ARG 149 ILE 150 -0.0002

ILE 150 PRO 151 -0.0002

PRO 151 ARG 152 0.0002

ARG 152 SER 153 -0.0014

SER 153 ASP 154 -0.0001

ASP 154 VAL 155 -0.0102

VAL 155 MET 156 0.0000

MET 156 TYR 157 -0.0402

TYR 157 THR 158 0.0001

THR 158 ASP 159 -0.0285

ASP 159 TRP 160 0.0003

TRP 160 LYS 161 0.0101

LYS 161 LYS 162 0.0002

LYS 162 ASP 163 -0.0017

ASP 163 LYS 164 0.0005

LYS 164 CYS 165 0.0075

CYS 165 GLU 166 0.0001

GLU 166 PRO 167 -0.0445

PRO 167 LEU 168 -0.0001

LEU 168 GLU 169 -0.0265

GLU 169 LYS 170 -0.0001

LYS 170 GLN 171 -0.1766

GLN 171 HIS 172 -0.0001

HIS 172 PRO 3 -0.0584

PRO 3 LEU 4 -0.0001

LEU 4 CYS 5 0.0236

CYS 5 ALA 6 -0.0001

ALA 6 ASN 7 -0.0295

ASN 7 LEU 8 -0.0001

LEU 8 VAL 9 -0.0255

VAL 9 PRO 10 0.0001

PRO 10 VAL 11 -0.0214

VAL 11 PRO 12 0.0003

PRO 12 ILE 13 -0.0179

ILE 13 THR 14 -0.0004

THR 14 ASN 15 -0.0123

ASN 15 ALA 16 0.0000

ALA 16 THR 17 -0.0135

THR 17 LEU 18 0.0002

LEU 18 ASP 19 0.0029

ASP 19 ARG 20 0.0001

ARG 20 ILE 21 -0.0054

ILE 21 THR 22 0.0001

THR 22 GLY 23 0.0241

GLY 23 LYS 24 0.0002

LYS 24 TRP 25 -0.0224

TRP 25 PHE 26 0.0001

PHE 26 TYR 27 -0.0202

TYR 27 ILE 28 -0.0002

ILE 28 ALA 29 -0.0284

ALA 29 SER 30 -0.0000

SER 30 ALA 31 -0.0206

ALA 31 PHE 32 -0.0000

PHE 32 ARG 33 -0.0153

ARG 33 ASN 34 0.0002

ASN 34 GLU 35 0.0062

GLU 35 GLU 36 -0.0000

GLU 36 TYR 37 0.0017

TYR 37 ASN 38 0.0002

ASN 38 LYS 39 0.0108

LYS 39 SER 40 -0.0001

SER 40 VAL 41 0.1308

VAL 41 GLN 42 0.0003

GLN 42 GLU 43 0.0651

GLU 43 ILE 44 0.0000

ILE 44 GLN 45 -0.0014

GLN 45 ALA 46 0.0002

ALA 46 THR 47 -0.0184

THR 47 PHE 48 0.0001

PHE 48 PHE 49 0.0004

PHE 49 TYR 50 -0.0004

TYR 50 PHE 51 0.0184

PHE 51 THR 52 -0.0001

THR 52 PRO 53 -0.0012

PRO 53 ASN 54 0.0002

ASN 54 LYS 55 -0.0547

LYS 55 THR 56 0.0000

THR 56 GLU 57 -0.0048

GLU 57 ASP 58 0.0000

ASP 58 THR 59 -0.0036

THR 59 ILE 60 0.0000

ILE 60 PHE 61 -0.0320

PHE 61 LEU 62 0.0003

LEU 62 ARG 63 0.0088

ARG 63 GLU 64 0.0002

GLU 64 TYR 65 -0.0128

TYR 65 GLN 66 0.0002

GLN 66 THR 67 -0.0502

THR 67 ARG 68 0.0000

ARG 68 GLN 69 -0.0326

GLN 69 ASN 70 0.0000

ASN 70 GLN 71 0.0130

GLN 71 CYS 72 0.0002

CYS 72 PHE 73 -0.0268

PHE 73 TYR 74 -0.0002

TYR 74 ASN 75 -0.0445

ASN 75 SER 76 0.0002

SER 76 SER 77 -0.0136

SER 77 TYR 78 0.0002

TYR 78 LEU 79 -0.0408

LEU 79 ASN 80 0.0001

ASN 80 VAL 81 0.0420

VAL 81 GLN 82 0.0002

GLN 82 ARG 83 0.0579

ARG 83 GLU 84 -0.0001

GLU 84 ASN 85 -0.0325

ASN 85 GLY 86 -0.0000

GLY 86 THR 87 0.0534

THR 87 VAL 88 0.0002

VAL 88 SER 89 0.0998

SER 89 ARG 90 -0.0001

ARG 90 TYR 91 0.1622

TYR 91 GLU 92 0.0000

GLU 92 GLY 93 0.0019

GLY 93 GLY 94 -0.0001

GLY 94 ARG 95 0.2322

ARG 95 GLU 96 -0.0001

GLU 96 HIS 97 0.0536

HIS 97 VAL 98 0.0003

VAL 98 ALA 99 0.1077

ALA 99 HIS 100 0.0001

HIS 100 LEU 101 0.0130

LEU 101 LEU 102 0.0001

LEU 102 PHE 103 0.0432

PHE 103 LEU 104 -0.0000

LEU 104 ARG 105 0.0267

ARG 105 ASP 106 0.0002

ASP 106 THR 107 -0.0098

THR 107 LYS 108 0.0002

LYS 108 THR 109 0.0078

THR 109 LEU 110 -0.0001

LEU 110 MET 111 -0.0022

MET 111 PHE 112 -0.0005

PHE 112 GLY 113 -0.0149

GLY 113 SER 114 0.0002

SER 114 TYR 115 -0.0063

TYR 115 LEU 116 0.0003

LEU 116 ASP 117 -0.0079

ASP 117 ASP 118 -0.0000

ASP 118 GLU 119 0.0049

GLU 119 LYS 120 -0.0000

LYS 120 ASN 121 0.0117

ASN 121 TRP 122 -0.0002

TRP 122 GLY 123 -0.0130

GLY 123 LEU 124 -0.0002

LEU 124 SER 125 -0.0145

SER 125 PHE 126 0.0000

PHE 126 TYR 127 -0.0233

TYR 127 ALA 128 -0.0001

ALA 128 ASP 129 -0.0077

ASP 129 LYS 130 -0.0002

LYS 130 PRO 131 0.0174

PRO 131 GLU 132 0.0004

GLU 132 THR 133 -0.0150

THR 133 THR 134 -0.0002

THR 134 LYS 135 -0.0110

LYS 135 GLU 136 -0.0001

GLU 136 GLN 137 -0.0031

GLN 137 LEU 138 -0.0000

LEU 138 GLY 139 -0.0120

GLY 139 GLU 140 -0.0004

GLU 140 PHE 141 0.0178

PHE 141 TYR 142 0.0000

TYR 142 GLU 143 0.0138

GLU 143 ALA 144 -0.0004

ALA 144 LEU 145 0.0011

LEU 145 ASP 146 0.0001

ASP 146 CYS 147 0.0151

CYS 147 LEU 148 -0.0001

LEU 148 ARG 149 -0.0131

ARG 149 ILE 150 0.0000

ILE 150 PRO 151 0.0005

PRO 151 ARG 152 0.0000

ARG 152 SER 153 -0.0065

SER 153 ASP 154 -0.0001

ASP 154 VAL 155 -0.0105

VAL 155 MET 156 -0.0000

MET 156 TYR 157 -0.0417

TYR 157 THR 158 -0.0003

THR 158 ASP 159 -0.0379

ASP 159 TRP 160 -0.0001

TRP 160 LYS 161 0.0015

LYS 161 LYS 162 -0.0000

LYS 162 ASP 163 -0.0017

ASP 163 LYS 164 0.0001

LYS 164 CYS 165 0.0052

CYS 165 GLU 166 -0.0001

GLU 166 PRO 167 -0.0357

PRO 167 LEU 168 0.0000

LEU 168 GLU 169 -0.0166

GLU 169 LYS 170 -0.0002

LYS 170 GLN 171 -0.0894

GLN 171 HIS 172 -0.0002

HIS 172 GLU 173 -0.0056

GLU 173 LYS 174 -0.0000

LYS 174 GLU 175 -0.0155

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APV ***

CA strain for 240110225555577823

--- normal mode 7 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *