Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *

CA strain for 240110225555577823

--- normal mode 10 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
PRO 3 LEU 4 0.0001

LEU 4 CYS 5 -0.0355

CYS 5 ALA 6 -0.0001

ALA 6 ASN 7 0.0484

ASN 7 LEU 8 -0.0000

LEU 8 VAL 9 0.0362

VAL 9 PRO 10 0.0003

PRO 10 VAL 11 0.0516

VAL 11 PRO 12 -0.0004

PRO 12 ILE 13 0.0085

ILE 13 THR 14 0.0000

THR 14 ASN 15 0.0452

ASN 15 ALA 16 -0.0001

ALA 16 THR 17 0.0296

THR 17 LEU 18 0.0001

LEU 18 ASP 19 0.0330

ASP 19 ARG 20 0.0001

ARG 20 ILE 21 0.0171

ILE 21 THR 22 -0.0001

THR 22 GLY 23 -0.1098

GLY 23 LYS 24 -0.0002

LYS 24 TRP 25 0.0211

TRP 25 PHE 26 0.0001

PHE 26 TYR 27 0.0093

TYR 27 ILE 28 -0.0002

ILE 28 ALA 29 0.0257

ALA 29 SER 30 -0.0003

SER 30 ALA 31 0.0269

ALA 31 PHE 32 0.0005

PHE 32 ARG 33 0.0619

ARG 33 ASN 34 -0.0000

ASN 34 GLU 35 -0.0442

GLU 35 GLU 36 0.0001

GLU 36 TYR 37 0.0236

TYR 37 ASN 38 -0.0002

ASN 38 LYS 39 -0.0438

LYS 39 SER 40 -0.0001

SER 40 VAL 41 -0.0743

VAL 41 GLN 42 0.0001

GLN 42 GLU 43 -0.0930

GLU 43 ILE 44 -0.0002

ILE 44 GLN 45 -0.0126

GLN 45 ALA 46 0.0000

ALA 46 THR 47 -0.0137

THR 47 PHE 48 -0.0001

PHE 48 PHE 49 -0.0382

PHE 49 TYR 50 0.0001

TYR 50 PHE 51 -0.0771

PHE 51 THR 52 -0.0002

THR 52 PRO 53 -0.0623

PRO 53 ASN 54 0.0001

ASN 54 LYS 55 0.0553

LYS 55 THR 56 -0.0001

THR 56 GLU 57 0.0295

GLU 57 ASP 58 -0.0004

ASP 58 THR 59 -0.0202

THR 59 ILE 60 0.0001

ILE 60 PHE 61 -0.0387

PHE 61 LEU 62 -0.0002

LEU 62 ARG 63 -0.0295

ARG 63 GLU 64 0.0004

GLU 64 TYR 65 -0.0238

TYR 65 GLN 66 -0.0002

GLN 66 THR 67 -0.0240

THR 67 ARG 68 -0.0000

ARG 68 GLN 69 0.0057

GLN 69 ASN 70 0.0002

ASN 70 GLN 71 -0.0220

GLN 71 CYS 72 -0.0002

CYS 72 PHE 73 0.0965

PHE 73 TYR 74 0.0000

TYR 74 ASN 75 0.0131

ASN 75 SER 76 -0.0000

SER 76 SER 77 -0.0758

SER 77 TYR 78 0.0000

TYR 78 LEU 79 -0.1927

LEU 79 ASN 80 0.0001

ASN 80 VAL 81 0.0296

VAL 81 GLN 82 -0.0002

GLN 82 ARG 83 0.0464

ARG 83 GLU 84 -0.0003

GLU 84 ASN 85 0.0172

ASN 85 GLY 86 0.0001

GLY 86 THR 87 -0.0198

THR 87 VAL 88 0.0003

VAL 88 SER 89 0.0992

SER 89 ARG 90 -0.0002

ARG 90 TYR 91 0.2503

TYR 91 GLU 92 -0.0002

GLU 92 GLY 93 0.1019

GLY 93 GLY 94 -0.0003

GLY 94 ARG 95 -0.1010

ARG 95 GLU 96 0.0002

GLU 96 HIS 97 -0.1069

HIS 97 VAL 98 0.0003

VAL 98 ALA 99 -0.0741

ALA 99 HIS 100 0.0001

HIS 100 LEU 101 -0.0068

LEU 101 LEU 102 0.0003

LEU 102 PHE 103 -0.0594

PHE 103 LEU 104 -0.0001

LEU 104 ARG 105 -0.0468

ARG 105 ASP 106 0.0000

ASP 106 THR 107 0.0260

THR 107 LYS 108 -0.0000

LYS 108 THR 109 -0.0220

THR 109 LEU 110 -0.0002

LEU 110 MET 111 0.0105

MET 111 PHE 112 0.0001

PHE 112 GLY 113 -0.0123

GLY 113 SER 114 0.0001

SER 114 TYR 115 0.0068

TYR 115 LEU 116 -0.0001

LEU 116 ASP 117 -0.0033

ASP 117 ASP 118 -0.0000

ASP 118 GLU 119 0.0121

GLU 119 LYS 120 0.0003

LYS 120 ASN 121 -0.0607

ASN 121 TRP 122 0.0001

TRP 122 GLY 123 0.0284

GLY 123 LEU 124 0.0001

LEU 124 SER 125 0.0064

SER 125 PHE 126 0.0003

PHE 126 TYR 127 0.0227

TYR 127 ALA 128 -0.0002

ALA 128 ASP 129 0.0104

ASP 129 LYS 130 -0.0000

LYS 130 PRO 131 -0.0346

PRO 131 GLU 132 -0.0001

GLU 132 THR 133 0.1312

THR 133 THR 134 0.0001

THR 134 LYS 135 0.0391

LYS 135 GLU 136 -0.0001

GLU 136 GLN 137 0.0081

GLN 137 LEU 138 -0.0000

LEU 138 GLY 139 0.0402

GLY 139 GLU 140 0.0000

GLU 140 PHE 141 -0.0261

PHE 141 TYR 142 -0.0001

TYR 142 GLU 143 -0.0008

GLU 143 ALA 144 -0.0003

ALA 144 LEU 145 0.0017

LEU 145 ASP 146 0.0002

ASP 146 CYS 147 -0.0349

CYS 147 LEU 148 0.0002

LEU 148 ARG 149 0.0129

ARG 149 ILE 150 0.0002

ILE 150 PRO 151 -0.0036

PRO 151 ARG 152 0.0000

ARG 152 SER 153 -0.0013

SER 153 ASP 154 -0.0002

ASP 154 VAL 155 0.0106

VAL 155 MET 156 0.0002

MET 156 TYR 157 0.0578

TYR 157 THR 158 0.0001

THR 158 ASP 159 0.0528

ASP 159 TRP 160 -0.0002

TRP 160 LYS 161 -0.0455

LYS 161 LYS 162 0.0000

LYS 162 ASP 163 -0.0275

ASP 163 LYS 164 0.0002

LYS 164 CYS 165 -0.0491

CYS 165 GLU 166 0.0002

GLU 166 PRO 167 0.0359

PRO 167 LEU 168 -0.0000

LEU 168 GLU 169 0.0155

GLU 169 LYS 170 0.0002

LYS 170 GLN 171 0.1224

GLN 171 HIS 172 -0.0001

HIS 172 PRO 3 -0.0740

PRO 3 LEU 4 0.0002

LEU 4 CYS 5 0.1026

CYS 5 ALA 6 -0.0001

ALA 6 ASN 7 -0.1129

ASN 7 LEU 8 0.0003

LEU 8 VAL 9 -0.0337

VAL 9 PRO 10 -0.0003

PRO 10 VAL 11 -0.0479

VAL 11 PRO 12 0.0003

PRO 12 ILE 13 -0.0073

ILE 13 THR 14 0.0000

THR 14 ASN 15 -0.0485

ASN 15 ALA 16 0.0003

ALA 16 THR 17 -0.0304

THR 17 LEU 18 0.0001

LEU 18 ASP 19 -0.0335

ASP 19 ARG 20 -0.0001

ARG 20 ILE 21 -0.0113

ILE 21 THR 22 -0.0001

THR 22 GLY 23 0.1440

GLY 23 LYS 24 0.0001

LYS 24 TRP 25 -0.0174

TRP 25 PHE 26 -0.0001

PHE 26 TYR 27 -0.0088

TYR 27 ILE 28 -0.0001

ILE 28 ALA 29 -0.0355

ALA 29 SER 30 0.0005

SER 30 ALA 31 -0.0288

ALA 31 PHE 32 0.0002

PHE 32 ARG 33 -0.0412

ARG 33 ASN 34 0.0002

ASN 34 GLU 35 0.0299

GLU 35 GLU 36 0.0000

GLU 36 TYR 37 -0.0007

TYR 37 ASN 38 -0.0002

ASN 38 LYS 39 -0.0093

LYS 39 SER 40 0.0001

SER 40 VAL 41 0.1229

VAL 41 GLN 42 -0.0000

GLN 42 GLU 43 0.1014

GLU 43 ILE 44 -0.0001

ILE 44 GLN 45 0.0212

GLN 45 ALA 46 -0.0001

ALA 46 THR 47 0.0142

THR 47 PHE 48 -0.0001

PHE 48 PHE 49 0.0216

PHE 49 TYR 50 0.0001

TYR 50 PHE 51 0.0853

PHE 51 THR 52 0.0000

THR 52 PRO 53 0.0460

PRO 53 ASN 54 0.0004

ASN 54 LYS 55 -0.0425

LYS 55 THR 56 -0.0002

THR 56 GLU 57 -0.0214

GLU 57 ASP 58 -0.0003

ASP 58 THR 59 0.0185

THR 59 ILE 60 0.0002

ILE 60 PHE 61 0.0725

PHE 61 LEU 62 -0.0005

LEU 62 ARG 63 0.0541

ARG 63 GLU 64 -0.0001

GLU 64 TYR 65 -0.0088

TYR 65 GLN 66 -0.0000

GLN 66 THR 67 0.0143

THR 67 ARG 68 -0.0003

ARG 68 GLN 69 -0.0296

GLN 69 ASN 70 0.0000

ASN 70 GLN 71 0.0371

GLN 71 CYS 72 0.0001

CYS 72 PHE 73 -0.0968

PHE 73 TYR 74 0.0002

TYR 74 ASN 75 -0.0411

ASN 75 SER 76 -0.0000

SER 76 SER 77 0.0890

SER 77 TYR 78 -0.0003

TYR 78 LEU 79 0.2379

LEU 79 ASN 80 0.0004

ASN 80 VAL 81 -0.0594

VAL 81 GLN 82 -0.0000

GLN 82 ARG 83 -0.0719

ARG 83 GLU 84 0.0000

GLU 84 ASN 85 -0.0155

ASN 85 GLY 86 -0.0003

GLY 86 THR 87 0.0023

THR 87 VAL 88 0.0001

VAL 88 SER 89 -0.1373

SER 89 ARG 90 -0.0001

ARG 90 TYR 91 -0.3216

TYR 91 GLU 92 -0.0002

GLU 92 GLY 93 -0.1112

GLY 93 GLY 94 0.0003

GLY 94 ARG 95 0.0285

ARG 95 GLU 96 0.0000

GLU 96 HIS 97 0.0660

HIS 97 VAL 98 0.0001

VAL 98 ALA 99 0.0239

ALA 99 HIS 100 0.0001

HIS 100 LEU 101 0.0002

LEU 101 LEU 102 0.0000

LEU 102 PHE 103 0.0532

PHE 103 LEU 104 0.0003

LEU 104 ARG 105 0.0460

ARG 105 ASP 106 0.0002

ASP 106 THR 107 -0.0315

THR 107 LYS 108 0.0001

LYS 108 THR 109 0.0132

THR 109 LEU 110 -0.0001

LEU 110 MET 111 -0.0114

MET 111 PHE 112 -0.0000

PHE 112 GLY 113 0.0182

GLY 113 SER 114 -0.0002

SER 114 TYR 115 -0.0181

TYR 115 LEU 116 -0.0001

LEU 116 ASP 117 -0.0259

ASP 117 ASP 118 0.0002

ASP 118 GLU 119 0.0357

GLU 119 LYS 120 0.0001

LYS 120 ASN 121 0.0537

ASN 121 TRP 122 -0.0000

TRP 122 GLY 123 -0.0304

GLY 123 LEU 124 0.0000

LEU 124 SER 125 -0.0029

SER 125 PHE 126 0.0002

PHE 126 TYR 127 -0.0200

TYR 127 ALA 128 0.0003

ALA 128 ASP 129 -0.0200

ASP 129 LYS 130 -0.0003

LYS 130 PRO 131 0.0394

PRO 131 GLU 132 -0.0002

GLU 132 THR 133 -0.0979

THR 133 THR 134 -0.0004

THR 134 LYS 135 -0.0516

LYS 135 GLU 136 0.0003

GLU 136 GLN 137 -0.0024

GLN 137 LEU 138 -0.0003

LEU 138 GLY 139 -0.0510

GLY 139 GLU 140 -0.0004

GLU 140 PHE 141 0.0228

PHE 141 TYR 142 0.0000

TYR 142 GLU 143 0.0037

GLU 143 ALA 144 -0.0002

ALA 144 LEU 145 0.0045

LEU 145 ASP 146 0.0000

ASP 146 CYS 147 0.0548

CYS 147 LEU 148 0.0000

LEU 148 ARG 149 -0.0079

ARG 149 ILE 150 0.0001

ILE 150 PRO 151 0.0118

PRO 151 ARG 152 0.0000

ARG 152 SER 153 -0.0075

SER 153 ASP 154 -0.0000

ASP 154 VAL 155 -0.0131

VAL 155 MET 156 0.0001

MET 156 TYR 157 -0.0657

TYR 157 THR 158 0.0004

THR 158 ASP 159 -0.0703

ASP 159 TRP 160 -0.0001

TRP 160 LYS 161 0.0165

LYS 161 LYS 162 -0.0004

LYS 162 ASP 163 0.0214

ASP 163 LYS 164 0.0002

LYS 164 CYS 165 0.0356

CYS 165 GLU 166 0.0001

GLU 166 PRO 167 -0.0422

PRO 167 LEU 168 0.0002

LEU 168 GLU 169 -0.0053

GLU 169 LYS 170 -0.0001

LYS 170 GLN 171 -0.0426

GLN 171 HIS 172 -0.0003

HIS 172 GLU 173 0.0079

GLU 173 LYS 174 -0.0000

LYS 174 GLU 175 -0.0232

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APV ***

CA strain for 240110225555577823

--- normal mode 10 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APV *