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Normal Mode Analysis for ID 21053022541240624

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0021
mode 8 1.17 0.0022
mode 9 1.55 0.0041
mode 10 1.62 0.0026
mode 11 1.66 0.0045
mode 12 1.67 0.0023
mode 13 1.68 0.0055
mode 14 1.84 0.0059
mode 15 1.88 0.0030
mode 16 1.97 0.0026
mode 17 2.02 0.0142
mode 18 2.04 0.0079
mode 19 2.05 0.0202
mode 20 2.10 0.0096
mode 21 2.16 0.0202
mode 22 2.19 0.0374
mode 23 2.26 0.0604
mode 24 2.29 0.0694
mode 25 2.38 0.0527
mode 26 2.46 0.0048
mode 27 2.49 0.0092
mode 28 2.56 0.0284
mode 29 2.77 0.1210
mode 30 2.82 0.0313
mode 31 2.86 0.0910
mode 32 2.98 0.0606
mode 33 3.00 0.0879
mode 34 3.06 0.0864
mode 35 3.15 0.0536
mode 36 3.21 0.0469
mode 37 3.28 0.1664
mode 38 3.30 0.0134
mode 39 3.37 0.0146
mode 40 3.42 0.2121
mode 41 3.48 0.1904
mode 42 3.57 0.1421
mode 43 3.66 0.1065
mode 44 3.70 0.1075
mode 45 3.72 0.1518
mode 46 3.77 0.0489
mode 47 3.80 0.0547
mode 48 3.85 0.2631
mode 49 3.90 0.1615
mode 50 3.93 0.1376
mode 51 3.96 0.0723
mode 52 4.00 0.0732
mode 53 4.10 0.0352
mode 54 4.18 0.0854
mode 55 4.23 0.0160
mode 56 4.27 0.2764
mode 57 4.31 0.0573
mode 58 4.40 0.2323
mode 59 4.44 0.3486
mode 60 4.49 0.1746
mode 61 4.49 0.0590
mode 62 4.52 0.2130
mode 63 4.59 0.0119
mode 64 4.68 0.0538
mode 65 4.71 0.1686
mode 66 4.78 0.0240
mode 67 4.78 0.1635
mode 68 4.84 0.2629
mode 69 4.96 0.1417
mode 70 5.00 0.4693
mode 71 5.10 0.3268
mode 72 5.11 0.2983
mode 73 5.20 0.4576
mode 74 5.24 0.2252
mode 75 5.30 0.2248
mode 76 5.31 0.3822
mode 77 5.36 0.3459
mode 78 5.40 0.3199
mode 79 5.48 0.2928
mode 80 5.58 0.4139
mode 81 5.60 0.2222
mode 82 5.64 0.2482
mode 83 5.65 0.2921
mode 84 5.78 0.1958
mode 85 5.81 0.2415
mode 86 5.90 0.2066
mode 87 5.90 0.3159
mode 88 5.97 0.3627
mode 89 6.01 0.1601
mode 90 6.09 0.2557
mode 91 6.11 0.2787
mode 92 6.18 0.2325
mode 93 6.21 0.2704
mode 94 6.27 0.2716
mode 95 6.29 0.3858
mode 96 6.35 0.0229
mode 97 6.39 0.3551
mode 98 6.43 0.2823
mode 99 6.46 0.4456
mode 100 6.50 0.1791
mode 101 6.54 0.4038
mode 102 6.58 0.2709
mode 103 6.66 0.2357
mode 104 6.67 0.3342
mode 105 6.76 0.2303
mode 106 6.78 0.1635

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.