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***  ejemplolab9  ***

Normal Mode Analysis for ID 21051911425319911

conformational change will be analysed

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: Rotation-translation modes have a cumulative overlap of 0.3810 !!! This probably means that the second conformation was not fitted properly onto the first one.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.5883 0.803 -160.2589
mode 8 1.25 0.6743 0.808 13.5314
mode 9 1.87 0.6679 0.825 -22.1131
mode 10 2.35 0.6970 0.894 -46.9886
mode 11 2.92 0.6964 0.894 -3.6781
mode 12 3.38 0.6177 0.894 -2.6614
mode 13 4.28 0.6056 0.896 5.8382
mode 14 4.41 0.4842 0.896 1.7741
mode 15 4.45 0.4454 0.896 -2.2812
mode 16 4.68 0.4796 0.896 5.0121
mode 17 4.80 0.5498 0.896 0.8783
mode 18 4.94 0.5407 0.896 -2.5258
mode 19 5.27 0.3293 0.899 -9.4456
mode 20 5.36 0.4472 0.902 10.4784
mode 21 5.53 0.4482 0.904 -6.5385
mode 22 5.62 0.3621 0.904 3.1691
mode 23 5.74 0.4666 0.904 -1.3666
mode 24 6.00 0.3783 0.906 4.6993
mode 25 6.19 0.5525 0.907 -9.6153
mode 26 6.29 0.4419 0.907 1.1415
mode 27 6.40 0.5144 0.907 -0.6147
mode 28 6.51 0.2360 0.909 4.3724
mode 29 6.60 0.5125 0.909 -3.6197
mode 30 6.76 0.5871 0.909 1.0291
mode 31 6.86 0.4300 0.909 1.9729
mode 32 7.06 0.4300 0.909 -0.5873
mode 33 7.08 0.3865 0.909 -4.5553
mode 34 7.21 0.4619 0.911 -5.8166
mode 35 7.28 0.4192 0.911 1.5607
mode 36 7.39 0.4045 0.911 0.4766
mode 37 7.42 0.5072 0.911 0.7941
mode 38 7.55 0.4065 0.911 -2.3736
mode 39 7.58 0.4062 0.912 -4.9894
mode 40 7.67 0.3325 0.914 8.4191
mode 41 7.74 0.3400 0.916 -8.1630
mode 42 7.88 0.4076 0.916 0.1379
mode 43 7.92 0.2103 0.917 4.6281
mode 44 8.02 0.4417 0.917 -2.7223
mode 45 8.14 0.4104 0.917 5.2110
mode 46 8.20 0.3282 0.917 1.2029
mode 47 8.28 0.4291 0.921 -10.6008
mode 48 8.34 0.3054 0.923 -6.2544
mode 49 8.39 0.4839 0.926 10.2150
mode 50 8.52 0.3901 0.928 -5.1496
mode 51 8.66 0.3131 0.928 -0.9667
mode 52 8.68 0.3987 0.928 3.1394
mode 53 8.76 0.3490 0.928 3.0079
mode 54 8.84 0.1906 0.928 -0.9473
mode 55 8.86 0.2934 0.928 -3.7835
mode 56 8.91 0.3714 0.929 -4.9828
mode 57 9.02 0.1052 0.929 -1.1518
mode 58 9.10 0.3187 0.929 2.4190
mode 59 9.21 0.3706 0.929 -0.7661
mode 60 9.29 0.3776 0.929 -0.5297
mode 61 9.38 0.3772 0.929 -0.4239
mode 62 9.42 0.4887 0.929 1.6763
mode 63 9.50 0.3396 0.929 1.0391
mode 64 9.54 0.4964 0.929 -0.4917
mode 65 9.63 0.3781 0.929 -5.0759
mode 66 9.70 0.2353 0.929 0.1989
mode 67 9.77 0.2689 0.929 2.4970
mode 68 9.82 0.4466 0.933 -8.4417
mode 69 9.90 0.2436 0.933 -0.5297
mode 70 10.00 0.4100 0.933 1.5827
mode 71 10.08 0.3491 0.933 -3.2136
mode 72 10.16 0.2274 0.933 -0.3573
mode 73 10.17 0.5031 0.933 4.0447
mode 74 10.28 0.3855 0.933 -2.0812
mode 75 10.30 0.4629 0.933 1.9376
mode 76 10.40 0.3905 0.934 6.7621
mode 77 10.42 0.3535 0.936 3.2045
mode 78 10.47 0.4027 0.936 2.7240
mode 79 10.53 0.2885 0.936 0.2237
mode 80 10.56 0.4010 0.936 -3.7466
mode 81 10.59 0.3331 0.938 5.8031
mode 82 10.64 0.4327 0.938 -2.1717
mode 83 10.65 0.4239 0.938 -2.7533
mode 84 10.72 0.3520 0.938 4.3453
mode 85 10.84 0.4351 0.938 3.0094
mode 86 10.88 0.3962 0.938 2.2257
mode 87 10.91 0.4869 0.938 -1.5221
mode 88 11.01 0.3362 0.938 -0.5895
mode 89 11.04 0.4860 0.938 0.4863
mode 90 11.09 0.4336 0.938 -0.3921
mode 91 11.16 0.3976 0.938 0.2979
mode 92 11.27 0.3577 0.939 2.6224
mode 93 11.30 0.4248 0.939 -2.3004
mode 94 11.34 0.3669 0.939 4.2402
mode 95 11.41 0.5164 0.939 -0.7266
mode 96 11.46 0.4565 0.939 -1.3807
mode 97 11.52 0.4014 0.939 -0.9006
mode 98 11.54 0.4264 0.939 1.8358
mode 99 11.55 0.4149 0.939 0.0991
mode 100 11.65 0.4490 0.939 0.4397
mode 101 11.72 0.5413 0.941 -5.3007
mode 102 11.74 0.4759 0.941 0.7017
mode 103 11.84 0.5538 0.941 0.2800
mode 104 11.86 0.4444 0.941 2.1533
mode 105 11.88 0.4472 0.941 1.9929
mode 106 11.94 0.4436 0.941 -0.3240

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.