CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  TLR4-MD2  ***

<R2> analysis for 2404080903442958768

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0363
GLU 270.0209
PRO 280.0224
CYS 290.0198
VAL 300.0217
GLU 310.0226
VAL 320.0232
VAL 330.0242
PRO 340.0248
ASN 350.0220
ILE 360.0204
THR 370.0185
TYR 380.0171
GLN 390.0152
CYS 400.0151
MET 410.0142
GLU 420.0158
LEU 430.0183
ASN 440.0180
PHE 450.0149
TYR 460.0141
LYS 470.0109
ILE 480.0086
PRO 490.0116
ASP 500.0115
ASN 510.0155
LEU 520.0155
PRO 530.0167
PHE 540.0147
SER 550.0177
THR 560.0157
LYS 570.0155
ASN 580.0139
LEU 590.0109
ASP 600.0103
LEU 610.0095
SER 620.0097
PHE 630.0119
ASN 640.0126
PRO 650.0133
LEU 660.0103
ARG 670.0115
HIS 680.0098
LEU 690.0060
GLY 700.0065
SER 710.0067
TYR 720.0039
SER 730.0012
PHE 740.0029
PHE 750.0050
SER 760.0078
PHE 770.0098
PRO 780.0113
GLU 790.0144
LEU 800.0120
GLN 810.0132
VAL 820.0107
LEU 830.0064
ASP 840.0059
LEU 850.0047
SER 860.0062
ARG 870.0084
CYS 880.0090
GLU 890.0111
ILE 900.0088
GLN 910.0120
THR 920.0112
ILE 930.0085
GLU 940.0103
ASP 950.0116
GLY 960.0094
ALA 970.0055
TYR 980.0058
GLN 990.0091
SER 1000.0093
LEU 1010.0100
SER 1020.0140
HIS 1030.0149
LEU 1040.0114
SER 1050.0125
THR 1060.0090
LEU 1070.0047
ILE 1080.0024
LEU 1090.0019
THR 1100.0038
GLY 1110.0071
ASN 1120.0078
PRO 1130.0113
ILE 1140.0107
GLN 1150.0150
SER 1160.0146
LEU 1170.0124
ALA 1180.0136
LEU 1190.0165
GLY 1200.0143
ALA 1210.0104
PHE 1220.0102
SER 1230.0128
GLY 1240.0127
LEU 1250.0121
SER 1260.0161
SER 1270.0157
LEU 1280.0124
GLN 1290.0130
LYS 1300.0092
LEU 1310.0063
VAL 1320.0028
ALA 1330.0034
VAL 1340.0032
GLU 1350.0061
THR 1360.0067
ASN 1370.0103
LEU 1380.0102
ALA 1390.0136
SER 1400.0145
LEU 1410.0135
GLU 1420.0170
ASN 1430.0170
PHE 1440.0136
PRO 1450.0146
ILE 1460.0138
GLY 1470.0175
HIS 1480.0183
LEU 1490.0159
LYS 1500.0188
THR 1510.0175
LEU 1520.0141
LYS 1530.0137
GLU 1540.0100
LEU 1550.0079
ASN 1560.0045
VAL 1570.0052
ALA 1580.0040
HIS 1590.0058
ASN 1600.0081
LEU 1610.0116
ILE 1620.0119
GLN 1630.0141
SER 1640.0149
PHE 1650.0133
LYS 1660.0163
LEU 1670.0159
PRO 1680.0180
GLU 1690.0209
TYR 1700.0199
PHE 1710.0180
SER 1720.0213
ASN 1730.0212
LEU 1740.0179
THR 1750.0198
ASN 1760.0180
LEU 1770.0146
GLU 1780.0132
HIS 1790.0094
LEU 1800.0080
ASP 1810.0048
LEU 1820.0062
SER 1830.0042
SER 1840.0061
ASN 1850.0085
LYS 1860.0114
ILE 1870.0114
GLN 1880.0127
SER 1890.0134
ILE 1900.0135
TYR 1910.0167
CYS 1920.0176
THR 1930.0196
ASP 1940.0172
LEU 1950.0166
ARG 1960.0200
VAL 1970.0194
LEU 1980.0179
HIS 1990.0205
GLN 2000.0224
MET 2010.0208
PRO 2020.0217
LEU 2030.0205
LEU 2040.0173
ASN 2050.0151
LEU 2060.0122
SER 2070.0088
LEU 2080.0071
ASP 2090.0044
LEU 2100.0052
SER 2110.0034
LEU 2120.0056
ASN 2130.0075
PRO 2140.0097
MET 2150.0096
ASN 2160.0113
PHE 2170.0122
ILE 2180.0116
GLN 2190.0143
PRO 2200.0136
GLY 2210.0142
ALA 2220.0143
PHE 2230.0126
LYS 2240.0143
GLU 2250.0153
ILE 2260.0139
ARG 2270.0126
LEU 2280.0105
HIS 2290.0102
LYS 2300.0072
LEU 2310.0050
THR 2320.0030
LEU 2330.0030
ARG 2340.0025
ASN 2350.0045
ASN 2360.0055
PHE 2370.0065
ASP 2380.0084
SER 2390.0086
LEU 2400.0066
ASN 2410.0074
VAL 2420.0080
MET 2430.0060
LYS 2440.0053
THR 2450.0077
CYS 2460.0075
ILE 2470.0056
GLN 2480.0072
GLY 2490.0095
LEU 2500.0080
ALA 2510.0086
GLY 2520.0103
LEU 2530.0095
GLU 2540.0099
VAL 2550.0075
HIS 2560.0083
ARG 2570.0063
LEU 2580.0040
VAL 2590.0023
LEU 2600.0012
GLY 2610.0023
GLU 2620.0033
PHE 2630.0035
ARG 2640.0042
ASN 2650.0045
GLU 2660.0045
GLY 2670.0071
ASN 2680.0066
LEU 2690.0068
GLU 2700.0085
LYS 2710.0075
PHE 2720.0057
ASP 2730.0060
LYS 2740.0050
SER 2750.0036
ALA 2760.0034
LEU 2770.0018
GLU 2780.0014
GLY 2790.0031
LEU 2800.0028
CYS 2810.0036
ASN 2820.0056
LEU 2830.0059
THR 2840.0071
ILE 2850.0062
GLU 2860.0076
GLU 2870.0064
PHE 2880.0046
ARG 2890.0041
LEU 2900.0036
ALA 2910.0030
TYR 2920.0041
LEU 2930.0049
ASP 2940.0065
TYR 2950.0069
TYR 2960.0079
LEU 2970.0071
ASP 2980.0080
ASP 2990.0081
ILE 3000.0075
ILE 3010.0077
ASP 3020.0064
LEU 3030.0054
PHE 3040.0053
ASN 3050.0057
CYS 3060.0044
LEU 3070.0050
THR 3080.0066
ASN 3090.0070
VAL 3100.0067
SER 3110.0084
SER 3120.0078
PHE 3130.0071
SER 3140.0067
LEU 3150.0061
VAL 3160.0056
SER 3170.0059
VAL 3180.0065
THR 3190.0075
ILE 3200.0082
GLU 3210.0098
ARG 3220.0096
VAL 3230.0093
LYS 3240.0107
ASP 3250.0104
PHE 3260.0101
SER 3270.0108
TYR 3280.0101
ASN 3290.0103
PHE 3300.0092
GLY 3310.0094
TRP 3320.0090
GLN 3330.0096
HIS 3340.0090
LEU 3350.0092
GLU 3360.0085
LEU 3370.0084
VAL 3380.0077
ASN 3390.0074
CYS 3400.0076
LYS 3410.0085
PHE 3420.0093
GLY 3430.0100
GLN 3440.0107
PHE 3450.0106
PRO 3460.0100
THR 3470.0111
LEU 3480.0108
LYS 3490.0113
LEU 3500.0109
LYS 3510.0113
SER 3520.0110
LEU 3530.0106
LYS 3540.0106
ARG 3550.0104
LEU 3560.0102
THR 3570.0098
PHE 3580.0098
THR 3590.0093
SER 3600.0091
ASN 3610.0092
LYS 3620.0095
GLY 3630.0092
GLY 3640.0094
ASN 3650.0094
ALA 3660.0097
PHE 3670.0100
SER 3680.0103
GLU 3690.0105
VAL 3700.0108
ASP 3710.0114
LEU 3720.0112
PRO 3730.0115
SER 3740.0113
LEU 3750.0113
GLU 3760.0111
PHE 3770.0111
LEU 3780.0107
ASP 3790.0106
LEU 3800.0105
SER 3810.0103
ARG 3820.0103
ASN 3830.0100
GLY 3840.0095
LEU 3850.0093
SER 3860.0087
PHE 3870.0080
LYS 3880.0070
GLY 3890.0063
CYS 3900.0066
CYS 3910.0066
SER 3920.0074
GLN 3930.0088
SER 3940.0091
ASP 3950.0096
PHE 3960.0102
GLY 3970.0105
THR 3980.0105
THR 3990.0095
SER 4000.0108
LEU 4010.0107
LYS 4020.0112
TYR 4030.0113
LEU 4040.0105
ASP 4050.0104
LEU 4060.0097
SER 4070.0096
PHE 4080.0099
ASN 4090.0095
GLY 4100.0087
VAL 4110.0073
ILE 4120.0066
THR 4130.0050
MET 4140.0041
SER 4150.0033
SER 4160.0041
ASN 4170.0050
PHE 4180.0067
LEU 4190.0059
GLY 4200.0078
LEU 4210.0088
GLU 4220.0092
GLN 4230.0110
LEU 4240.0106
GLU 4250.0121
HIS 4260.0118
LEU 4270.0102
ASP 4280.0100
PHE 4290.0085
GLN 4300.0090
HIS 4310.0087
SER 4320.0081
ASN 4330.0067
LEU 4340.0051
LYS 4350.0033
GLN 4360.0014
MET 4370.0010
SER 4380.0025
GLU 4390.0028
PHE 4400.0036
SER 4410.0049
VAL 4420.0042
PHE 4430.0061
LEU 4440.0068
SER 4450.0079
LEU 4460.0093
ARG 4470.0114
ASN 4480.0134
LEU 4490.0121
ILE 4500.0143
TYR 4510.0131
LEU 4520.0103
ASP 4530.0094
ILE 4540.0068
SER 4550.0071
HIS 4560.0069
THR 4570.0060
HIS 4580.0050
THR 4590.0029
ARG 4600.0035
VAL 4610.0037
ALA 4620.0071
PHE 4630.0075
ASN 4640.0096
GLY 4650.0090
ILE 4660.0060
PHE 4670.0076
ASN 4680.0096
GLY 4690.0109
LEU 4700.0114
SER 4710.0153
SER 4720.0170
LEU 4730.0145
GLU 4740.0167
VAL 4750.0142
LEU 4760.0107
LYS 4770.0093
MET 4780.0059
ALA 4790.0063
GLY 4800.0065
ASN 4810.0038
SER 4820.0035
PHE 4830.0058
GLN 4840.0096
GLU 4850.0127
ASN 4860.0096
PHE 4870.0105
LEU 4880.0086
PRO 4890.0119
ASP 4900.0143
ILE 4910.0111
PHE 4920.0128
THR 4930.0164
GLU 4940.0165
LEU 4950.0158
ARG 4960.0200
ASN 4970.0212
LEU 4980.0174
THR 4990.0196
PHE 5000.0162
LEU 5010.0118
ASP 5020.0093
LEU 5030.0051
SER 5040.0055
GLN 5050.0067
CYS 5060.0037
GLN 5070.0073
LEU 5080.0058
GLU 5090.0094
GLN 5100.0116
LEU 5110.0116
SER 5120.0153
PRO 5130.0178
THR 5140.0195
ALA 5150.0153
PHE 5160.0160
ASN 5170.0207
SER 5180.0221
LEU 5190.0203
SER 5200.0248
SER 5210.0248
LEU 5220.0203
GLN 5230.0215
VAL 5240.0176
LEU 5250.0127
ASN 5260.0097
MET 5270.0047
SER 5280.0070
HIS 5290.0091
ASN 5300.0062
ASN 5310.0098
PHE 5320.0086
PHE 5330.0128
SER 5340.0121
LEU 5350.0079
ASP 5360.0125
THR 5370.0153
PHE 5380.0201
PRO 5390.0181
TYR 5400.0180
LYS 5410.0231
CYS 5420.0256
LEU 5430.0229
ASN 5440.0279
SER 5450.0272
LEU 5460.0220
GLN 5470.0231
VAL 5480.0186
LEU 5490.0130
ASP 5500.0105
TYR 5510.0052
SER 5520.0091
LEU 5530.0123
ASN 5540.0091
HIS 5550.0128
ILE 5560.0096
MET 5570.0123
THR 5580.0149
SER 5590.0149
LYS 5600.0206
LYS 5610.0217
GLN 5620.0200
GLU 5630.0220
LEU 5640.0166
GLN 5650.0209
HIS 5660.0224
PHE 5670.0198
PRO 5680.0244
SER 5690.0288
SER 5700.0287
LEU 5710.0231
ALA 5720.0240
PHE 5730.0199
LEU 5740.0138
ASN 5750.0128
LEU 5760.0076
THR 5770.0130
GLN 5780.0156
ASN 5790.0132
ASP 5800.0167
PHE 5810.0139
ALA 5820.0179
CYS 5830.0183
THR 5840.0226
CYS 5850.0218
GLU 5860.0249
HIS 5870.0183
GLN 5880.0152
SER 5890.0159
PHE 5900.0113
LEU 5910.0073
GLN 5920.0063
TRP 5930.0085
ILE 5940.0034
LYS 5950.0049
ASP 5960.0105
GLN 5970.0135
ARG 5980.0135
GLN 5990.0194
LEU 6000.0181
LEU 6010.0146
VAL 6020.0185
GLU 6030.0214
VAL 6040.0178
GLU 6050.0230
ARG 6060.0213
MET 6070.0155
GLU 6080.0197
CYS 6090.0193
ALA 6100.0236
THR 6110.0266
PRO 6120.0297
SER 6130.0363
ASP 6140.0362
LYS 6150.0289
GLN 6160.0280
GLY 6170.0270
MET 6180.0228
PRO 6190.0171
VAL 6200.0109
LEU 6210.0087
SER 6220.0117
LEU 6230.0122
ASN 6240.0137
ILE 6250.0128
THR 6260.0184
CYS 6270.0238
GLN 190.0056
LYS 200.0056
GLN 210.0039
TYR 220.0057
TRP 230.0085
VAL 240.0085
CYS 250.0124
ASN 260.0158
SER 270.0191
SER 280.0231
ASP 290.0215
ALA 300.0171
SER 310.0135
ILE 320.0099
SER 330.0064
TYR 340.0025
THR 350.0015
TYR 360.0043
CYS 370.0069
ASP 380.0091
LYS 390.0110
MET 400.0109
GLN 410.0086
TYR 420.0086
PRO 430.0070
ILE 440.0052
SER 450.0053
ILE 460.0038
ASN 470.0063
VAL 480.0079
ASN 490.0110
PRO 500.0136
CYS 510.0142
ILE 520.0143
GLU 530.0190
LEU 540.0203
LYS 550.0255
GLY 560.0224
SER 570.0181
LYS 580.0141
GLY 590.0084
LEU 600.0055
LEU 610.0035
HIS 620.0036
ILE 630.0038
PHE 640.0056
TYR 650.0063
ILE 660.0079
PRO 670.0077
ARG 680.0093
ARG 690.0087
ASP 700.0074
LEU 710.0057
LYS 720.0061
GLN 730.0056
LEU 740.0050
TYR 750.0059
PHE 760.0065
ASN 770.0096
LEU 780.0102
TYR 790.0130
ILE 800.0138
THR 810.0152
VAL 820.0176
ASN 830.0170
THR 840.0169
MET 850.0199
ASN 860.0195
LEU 870.0197
PRO 880.0196
LYS 890.0163
ARG 900.0137
LYS 910.0103
GLU 920.0072
VAL 930.0052
ILE 940.0027
CYS 950.0036
ARG 960.0031
GLY 970.0027
SER 980.0029
ASP 990.0022
ASP 1000.0024
ASP 1010.0027
TYR 1020.0030
SER 1030.0031
PHE 1040.0038
CYS 1050.0036
ARG 1060.0035
ALA 1070.0056
LEU 1080.0060
LYS 1090.0078
GLY 1100.0083
GLU 1110.0077
THR 1120.0074
VAL 1130.0057
ASN 1140.0053
THR 1150.0046
THR 1160.0031
ILE 1170.0022
SER 1180.0023
PHE 1190.0080
SER 1200.0137
PHE 1210.0189
LYS 1220.0246
GLY 1230.0304
ILE 1240.0289
LYS 1250.0294
PHE 1260.0253
SER 1270.0246
LYS 1280.0225
GLY 1290.0183
LYS 1300.0139
TYR 1310.0134
LYS 1320.0103
CYS 1330.0100
VAL 1340.0089
VAL 1350.0063
GLU 1360.0074
ALA 1370.0060
ILE 1380.0082
SER 1390.0075
GLY 1400.0092
SER 1410.0106
PRO 1420.0125
GLU 1430.0108
GLU 1440.0109
MET 1450.0092
LEU 1460.0075
PHE 1470.0070
CYS 1480.0064
LEU 1490.0038
GLU 1500.0046
PHE 1510.0056
VAL 1520.0076
ILE 1530.0112
LEU 1540.0142
HIS 1550.0184
GLN 1560.0228
PRO 1570.0268
ASN 1580.0316

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.