CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  TRANSFERASE 31-MAR-06 2CJD  ***

<R2> analysis for 220405004109145553

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0636
THR 150.0464
THR 160.0258
PRO 170.0093
ASP 180.0194
ARG 190.0288
VAL 200.0130
HIS 210.0223
GLU 220.0405
VAL 230.0371
LEU 240.0175
GLY 250.0391
ARG 260.0529
SER 270.0320
MET 280.0217
LEU 290.0507
VAL 300.0454
ASP 310.0636
GLY 320.0512
LEU 330.0281
ASP 340.0244
ILE 350.0229
VAL 360.0222
LEU 370.0218
ASP 380.0224
LEU 390.0240
THR 400.0252
ARG 410.0234
SER 420.0211
GLY 430.0192
GLY 440.0165
SER 450.0160
TYR 460.0189
LEU 470.0210
VAL 480.0231
ASP 490.0229
ALA 500.0235
ILE 510.0221
THR 520.0266
GLY 530.0282
ARG 540.0270
ARG 550.0245
TYR 560.0221
LEU 570.0168
ASP 580.0142
MET 590.0095
PHE 600.0098
THR 610.0104
PHE 620.0112
VAL 630.0060
ALA 640.0034
SER 650.0059
SER 660.0094
ALA 670.0094
LEU 680.0122
GLY 690.0141
MET 700.0175
ASN 710.0210
PRO 720.0213
PRO 730.0239
ALA 740.0204
LEU 750.0170
VAL 760.0236
ASP 770.0252
ASP 780.0151
ARG 790.0098
GLU 800.0037
PHE 810.0031
HIS 820.0110
ALA 830.0116
GLU 840.0134
LEU 850.0161
MET 860.0236
GLN 870.0270
ALA 880.0255
ALA 890.0303
LEU 900.0406
ASN 910.0408
LYS 920.0361
PRO 930.0365
SER 940.0343
ASN 950.0284
SER 960.0287
ASP 970.0388
VAL 980.0398
TYR 990.0334
SER 1000.0294
VAL 1010.0239
ALA 1020.0171
MET 1030.0178
ALA 1040.0190
ARG 1050.0123
PHE 1060.0091
VAL 1070.0118
GLU 1080.0128
THR 1090.0082
PHE 1100.0060
ALA 1110.0102
ARG 1120.0104
VAL 1130.0071
LEU 1140.0032
GLY 1150.0037
ASP 1160.0024
PRO 1170.0053
ALA 1180.0048
LEU 1190.0045
PRO 1200.0080
HIS 1210.0063
LEU 1220.0074
PHE 1230.0089
PHE 1240.0097
VAL 1250.0111
GLU 1260.0153
GLY 1270.0138
GLY 1280.0116
ALA 1290.0095
LEU 1300.0072
ALA 1310.0065
VAL 1320.0057
GLU 1330.0053
ASN 1340.0031
ALA 1350.0020
LEU 1360.0034
LYS 1370.0024
ALA 1380.0013
ALA 1390.0037
PHE 1400.0061
ASP 1410.0051
TRP 1420.0065
LYS 1430.0089
SER 1440.0106
ARG 1450.0108
HIS 1460.0128
ASN 1470.0159
GLN 1480.0171
ALA 1490.0184
HIS 1500.0213
GLY 1510.0233
ILE 1520.0213
ASP 1530.0205
PRO 1540.0161
ALA 1550.0171
LEU 1560.0160
GLY 1570.0124
THR 1580.0120
GLN 1590.0116
VAL 1600.0085
LEU 1610.0077
HIS 1620.0060
LEU 1630.0060
ARG 1640.0084
GLY 1650.0073
ALA 1660.0063
PHE 1670.0078
HIS 1680.0088
GLY 1690.0121
ARG 1700.0152
SER 1710.0131
GLY 1720.0129
TYR 1730.0105
THR 1740.0105
LEU 1750.0144
SER 1760.0134
LEU 1770.0093
THR 1780.0103
ASN 1790.0108
THR 1800.0074
LYS 1810.0124
PRO 1820.0175
THR 1830.0227
ILE 1840.0201
THR 1850.0200
ALA 1860.0269
ARG 1870.0305
PHE 1880.0247
PRO 1890.0214
LYS 1900.0186
PHE 1910.0170
ASP 1920.0177
TRP 1930.0136
PRO 1940.0125
ARG 1950.0092
ILE 1960.0076
ASP 1970.0075
ALA 1980.0065
PRO 1990.0067
TYR 2000.0089
MET 2010.0127
ARG 2020.0167
PRO 2030.0213
GLY 2040.0243
LEU 2050.0200
ASP 2060.0205
GLU 2070.0178
PRO 2080.0159
ALA 2090.0147
MET 2100.0119
ALA 2110.0098
ALA 2120.0079
LEU 2130.0072
GLU 2140.0044
ALA 2150.0026
GLU 2160.0048
ALA 2170.0050
LEU 2180.0038
ARG 2190.0071
GLN 2200.0091
ALA 2210.0080
ARG 2220.0107
ALA 2230.0137
ALA 2240.0134
PHE 2250.0133
GLU 2260.0168
THR 2270.0189
ARG 2280.0177
PRO 2290.0181
HIS 2300.0159
ASP 2310.0145
ILE 2320.0111
ALA 2330.0082
CYS 2340.0051
PHE 2350.0040
VAL 2360.0035
ALA 2370.0037
GLU 2380.0045
PRO 2390.0049
ILE 2400.0064
GLN 2410.0064
GLY 2420.0064
GLU 2430.0074
GLY 2440.0088
GLY 2450.0103
ASP 2460.0083
ARG 2470.0089
HIS 2480.0088
PHE 2490.0073
ARG 2500.0081
PRO 2510.0074
GLU 2520.0065
PHE 2530.0043
PHE 2540.0034
ALA 2550.0042
ALA 2560.0023
MET 2570.0021
ARG 2580.0037
GLU 2590.0066
LEU 2600.0069
CYS 2610.0069
ASP 2620.0090
GLU 2630.0114
PHE 2640.0120
ASP 2650.0107
ALA 2660.0077
LEU 2670.0040
LEU 2680.0018
ILE 2690.0011
PHE 2700.0032
ASP 2710.0038
GLU 2720.0042
VAL 2730.0040
GLN 2740.0032
THR 2750.0037
GLY 2760.0032
CYS 2770.0036
GLY 2780.0048
LEU 2790.0037
THR 2800.0051
GLY 2810.0068
THR 2820.0050
ALA 2830.0041
TRP 2840.0040
ALA 2850.0041
TYR 2860.0039
GLN 2870.0042
GLN 2880.0055
LEU 2890.0052
ASP 2900.0051
VAL 2910.0025
ALA 2920.0024
PRO 2930.0013
ASP 2940.0023
ILE 2950.0013
VAL 2960.0030
ALA 2970.0042
PHE 2980.0043
GLY 2990.0053
LYS 3000.0036
LYS 3010.0040
THR 3020.0035
GLN 3030.0071
VAL 3040.0077
CYS 3050.0080
GLY 3060.0064
VAL 3070.0048
MET 3080.0044
ALA 3090.0036
GLY 3100.0049
ARG 3110.0058
ARG 3120.0078
VAL 3130.0057
ASP 3140.0080
GLU 3150.0115
VAL 3160.0104
ALA 3170.0117
ASP 3180.0094
ASN 3190.0066
VAL 3200.0043
PHE 3210.0069
ALA 3220.0092
VAL 3230.0082
PRO 3240.0116
SER 3250.0088
ARG 3260.0048
LEU 3270.0088
ASN 3280.0139
SER 3290.0178
THR 3300.0303
TRP 3310.0267
GLY 3320.0197
GLY 3330.0169
ASN 3340.0201
LEU 3350.0199
THR 3360.0183
ASP 3370.0139
MET 3380.0104
VAL 3390.0095
ARG 3400.0088
ALA 3410.0052
ARG 3420.0029
ARG 3430.0041
ILE 3440.0070
LEU 3450.0050
GLU 3460.0077
VAL 3470.0114
ILE 3480.0104
GLU 3490.0116
ALA 3500.0145
GLU 3510.0174
GLY 3520.0157
LEU 3530.0120
PHE 3540.0093
GLU 3550.0131
ARG 3560.0125
ALA 3570.0085
VAL 3580.0105
GLN 3590.0126
HIS 3600.0101
GLY 3610.0074
LYS 3620.0106
TYR 3630.0103
LEU 3640.0054
ARG 3650.0082
ALA 3660.0111
ARG 3670.0062
LEU 3680.0074
ASP 3690.0129
GLU 3700.0107
LEU 3710.0096
ALA 3720.0156
ALA 3730.0173
ASP 3740.0141
PHE 3750.0175
PRO 3760.0227
ALA 3770.0267
VAL 3780.0225
VAL 3790.0173
LEU 3800.0204
ASP 3810.0179
PRO 3820.0138
ARG 3830.0126
GLY 3840.0074
ARG 3850.0070
GLY 3860.0063
LEU 3870.0046
MET 3880.0033
CYS 3890.0046
ALA 3900.0079
PHE 3910.0123
SER 3920.0173
LEU 3930.0223
PRO 3940.0290
THR 3950.0314
THR 3960.0299
ALA 3970.0326
ASP 3980.0277
ARG 3990.0226
ASP 4000.0261
GLU 4010.0269
LEU 4020.0201
ILE 4030.0201
ARG 4040.0257
GLN 4050.0221
LEU 4060.0180
TRP 4070.0223
GLN 4080.0261
ARG 4090.0224
ALA 4100.0229
VAL 4110.0165
ILE 4120.0159
VAL 4130.0116
LEU 4140.0108
PRO 4150.0136
ALA 4160.0139
GLY 4170.0174
ALA 4180.0243
ASP 4190.0226
THR 4200.0149
VAL 4210.0113
ARG 4220.0065
PHE 4230.0028
ARG 4240.0033
PRO 4250.0063
PRO 4260.0090
LEU 4270.0095
THR 4280.0131
VAL 4290.0117
SER 4300.0139
THR 4310.0122
ALA 4320.0135
GLU 4330.0120
ILE 4340.0074
ASP 4350.0082
ALA 4360.0112
ALA 4370.0089
ILE 4380.0048
ALA 4390.0081
ALA 4400.0125
VAL 4410.0103
ARG 4420.0089
SER 4430.0138
ALA 4440.0177
LEU 4450.0171
PRO 4460.0196
VAL 4470.0241
VAL 4480.0257
THR 4490.0266

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.