*** pigment_half_540nm ***
output from eigenvector calculation:
STDOUT:
CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
Pdbmat> Version 3.50, Fevrier 2004.
Pdbmat> Options to be read in pdbmat.dat file.
Pdbmat> Coordinate filename = 221209044421126344.atom
Pdbmat> Distance cutoff = 8.00
Force constant = 10.00
Origin of mass values = CONS
Pdbmat> Levelshift = 1.0E-09
PRINTing level = 2
Pdbmat> Coordinate file 221209044421126344.atom to be opened.
Openam> File opened: 221209044421126344.atom
Pdbmat> Coordinate file in PDB format.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 5
First residue number = 317
Last residue number = 322
Number of atoms found = 519
Mean number per residue = 103.8
Pdbmat> Coordinate statistics:
= 36.128349 +/- 6.722281 From: 23.855000 To: 51.640000
= 47.980628 +/- 5.854138 From: 33.339000 To: 63.284000
= 31.570715 +/- 5.517010 From: 20.120000 To: 45.949000
Pdbmat> Masses are all set to one.
%Pdbmat-W> residue:'LOP ' is not a well known amino-acid.
%Pdbmat-W> residue:'LOP ' is not a well known amino-acid.
%Pdbmat-W> residue:'LOP ' is not a well known amino-acid.
%Pdbmat-W> residue:'LOP ' is not a well known amino-acid.
%Pdbmat-W> residue:'CHL ' is not a well known amino-acid.
%Pdbmat-W> 5 residue(s) not known.
Openam> File opened: pdbmat.xyzm
Pdbmat> Coordinates and masses considered are saved.
Openam> File opened: pdbmat.sdijb
Pdbmat> Matrix statistics:
Pdbmat> The matrix is 19.7337 % Filled.
Pdbmat> 239351 non-zero elements.
Pdbmat> 26253 atom-atom interactions.
Pdbmat> Number per atom= 101.17 +/- 39.14
Maximum number = 195
Minimum number = 27
Pdbmat> Matrix trace = 525060.
Pdbmat> Larger element = 688.852
Pdbmat> 0 elements larger than +/- 1.0E+10
Pdbmat> Normal end.
automatic determination of NRBL (NRBL = nresidues/200 + 1)
5 non-zero elements, NRBL set to 1
Diagonalize Tirion matrix using diagrtb
Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
Diagrtb> Version 2.52, November 2004.
Diagrtb> Options to be read in diagrtb.dat file.
Diagrtb> Options taken into account:
MATRix filename = pdbmat.sdijb
COORdinates filename = 221209044421126344.atom
Eigenvector OUTPut file = matrix.eigenrtb
Nb of VECTors required = 106
EigeNVALues chosen = LOWE
Type of SUBStructuring = NONE
Nb of residues per BLOck = 1
Origin of MASS values = CONS
MATRix FORMat = BINA
Temporary files cleaning = ALL
Output PRINting level = 2
Diagrtb> Memory allocation for Blocpdb.
Blocpdb> Entering in.
Openam> file on opening on unit 10:
diagrtb_work.xyzm
Blocpdb> Coordinate file 221209044421126344.atom to be opened.
Openam> file on opening on unit 11:
221209044421126344.atom
Blocpdb> Coordinate file in PDB format.
Blocpdb> 519 atoms picked in pdb file.
Blocpdb> All masses set to unity.
Blocpdb> Coordinate file is rewritten.
Blocpdb> Substructuring:
Blocpdb> 1 residue(s) per block.
Blocpdb> 5 residues.
Blocpdb> 96 atoms in block 1
Block first atom: 1
Blocpdb> 96 atoms in block 2
Block first atom: 97
Blocpdb> 96 atoms in block 3
Block first atom: 193
Blocpdb> 96 atoms in block 4
Block first atom: 289
Blocpdb> 135 atoms in block 5
Block first atom: 384
Blocpdb> 5 blocks.
Blocpdb> At most, 135 atoms in each of them.
Blocpdb> At least, 96 atoms in each of them.
Blocpdb> Normal end of Blocpdb.
Diagrtb> Memory allocation for Prepmat.
Diagrtb> Memory allocation for RTB.
Diagrtb> Memory allocation for Diagstd.
%Diagrtb-Wn> 30 eigenvectors, only, can be determined.
Diagrtb> Memory allocation for RTB_to_modes.
Prepmat> Entering in.
Prepmat> Rewriting of the matrix begins.
Prepmat> 239356 matrix lines read.
Prepmat> Matrix order = 1557
Prepmat> Matrix trace = 525060.0000
Prepmat> Last element read: 1557 1557 519.8418
Prepmat> 16 lines saved.
Prepmat> 0 empty lines.
Prepmat> Number of lines on output is as expected.
Prepmat> Normal end of Prepmat.
RTB> Entering in.
RTB> Number of atoms found in temporary coordinate file: 519
RTB> Total mass = 519.0000
RTB> Number of atoms found in matrix: 519
RTB> Number of blocks = 5
RTB> Projection begins.
RTB> Projected matrix is being saved.
RTB> Projected matrix trace = 5330.5017
RTB> 465 non-zero elements.
RTB> Normal end of RTB.
Diagstd> Entering in.
Openam> file on opening on unit 10:
diagrtb_work.sdijb
Diagstd> Projected matrix to be read from file: diagrtb_work.sdijb
Diagstd> CERFACS matrix format.
Diagstd> Projected matrix order = 30
Diagstd> Nb of non-zero elements: 465
Diagstd> Projected matrix trace = 5330.5017
Openam> file on opening on unit 11:
diagrtb_work.eigenfacs
Diagstd> Diagonalization.
Diagstd> 30 eigenvectors are computed.
Diagstd> 30 of them to be saved.
Diagstd> Sum of eigenvalues = 5330.5017
Diagstd> Best zero-eigenvalue found : 0.000000
Diagstd> 6 zero-eigenvalues, that is, below or equal to: 0.0000000
Diagstd> Selected eigenvalues:
0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
0.0000000 24.8812755 27.5261713 70.7594060 87.3264845
105.7825425 112.2563058 132.8961752 157.7622231 161.9116326
180.1877365 187.0748384 211.3214989 226.6657202 229.3645639
240.2224093 253.2743025 273.9325977 295.6802653 298.8577291
324.4031283 382.2108355 419.9969089 447.2781180 478.9288678
Diagstd> Frequencies (cm-1, if the input matrix is a hessian in CHARMM units):
0.0034337 0.0034337 0.0034338 0.0034339 0.0034340
0.0034340 541.6660302 569.7288140 913.4554465 1014.7715172
1116.8691136 1150.5371685 1251.8477737 1363.9447830 1381.7653769
1457.6655673 1485.2616570 1578.5819097 1634.8887394 1644.5930141
1683.0694594 1728.1874391 1797.2857802 1867.2671197 1877.2733993
1955.8601449 2122.9842770 2225.4524906 2296.5933672 2376.4615274
Diagstd> Normal end.
Rtb_to_modes> Entering in.
Rtb_to_modes> Number of atoms in temporary block-file = 519
Rtb_to_modes> Number of blocs = 5
Openam> file on opening on unit 10:
diagrtb_work.eigenfacs
Openam> file on opening on unit 11:
matrix.eigenrtb
Rdmodfacs> Entering in.
Rdmodfacs> Old Blzpack file format detected.
Rdmodfacs> Eigenvector number: 1
Rdmodfacs> Corresponding eigenvalue: 9.9986E-10
Rdmodfacs> Eigenvector number: 2
Rdmodfacs> Corresponding eigenvalue: 9.9987E-10
Rdmodfacs> Eigenvector number: 3
Rdmodfacs> Corresponding eigenvalue: 9.9991E-10
Rdmodfacs> Eigenvector number: 4
Rdmodfacs> Corresponding eigenvalue: 9.9995E-10
Rdmodfacs> Eigenvector number: 5
Rdmodfacs> Corresponding eigenvalue: 1.0000E-09
Rdmodfacs> Eigenvector number: 6
Rdmodfacs> Corresponding eigenvalue: 1.0000E-09
Rdmodfacs> Eigenvector number: 7
Rdmodfacs> Corresponding eigenvalue: 24.88
Rdmodfacs> Eigenvector number: 8
Rdmodfacs> Corresponding eigenvalue: 27.53
Rdmodfacs> Eigenvector number: 9
Rdmodfacs> Corresponding eigenvalue: 70.76
Rdmodfacs> Eigenvector number: 10
Rdmodfacs> Corresponding eigenvalue: 87.33
Rdmodfacs> Eigenvector number: 11
Rdmodfacs> Corresponding eigenvalue: 105.8
Rdmodfacs> Eigenvector number: 12
Rdmodfacs> Corresponding eigenvalue: 112.3
Rdmodfacs> Eigenvector number: 13
Rdmodfacs> Corresponding eigenvalue: 132.9
Rdmodfacs> Eigenvector number: 14
Rdmodfacs> Corresponding eigenvalue: 157.8
Rdmodfacs> Eigenvector number: 15
Rdmodfacs> Corresponding eigenvalue: 161.9
Rdmodfacs> Eigenvector number: 16
Rdmodfacs> Corresponding eigenvalue: 180.2
Rdmodfacs> Eigenvector number: 17
Rdmodfacs> Corresponding eigenvalue: 187.1
Rdmodfacs> Eigenvector number: 18
Rdmodfacs> Corresponding eigenvalue: 211.3
Rdmodfacs> Eigenvector number: 19
Rdmodfacs> Corresponding eigenvalue: 226.7
Rdmodfacs> Eigenvector number: 20
Rdmodfacs> Corresponding eigenvalue: 229.4
Rdmodfacs> Eigenvector number: 21
Rdmodfacs> Corresponding eigenvalue: 240.2
Rdmodfacs> Eigenvector number: 22
Rdmodfacs> Corresponding eigenvalue: 253.3
Rdmodfacs> Eigenvector number: 23
Rdmodfacs> Corresponding eigenvalue: 273.9
Rdmodfacs> Eigenvector number: 24
Rdmodfacs> Corresponding eigenvalue: 295.7
Rdmodfacs> Eigenvector number: 25
Rdmodfacs> Corresponding eigenvalue: 298.9
Rdmodfacs> Eigenvector number: 26
Rdmodfacs> Corresponding eigenvalue: 324.4
Rdmodfacs> Eigenvector number: 27
Rdmodfacs> Corresponding eigenvalue: 382.2
Rdmodfacs> Eigenvector number: 28
Rdmodfacs> Corresponding eigenvalue: 420.0
Rdmodfacs> Eigenvector number: 29
Rdmodfacs> Corresponding eigenvalue: 447.3
Rdmodfacs> Eigenvector number: 30
Rdmodfacs> Corresponding eigenvalue: 478.9
Rtb_to_modes> 30 vectors, with 30 coordinates in vector file.
Norm of eigenvectors in projected coordinates (one expected):
1.00003 0.99998 0.99999 1.00002 0.99999
1.00003 0.99994 1.00001 0.99994 1.00000
0.99996 0.99992 0.99999 0.99998 0.99999
0.99998 1.00003 0.99998 1.00000 1.00000
0.99998 1.00004 1.00006 1.00000 0.99998
1.00000 0.99997 1.00002 1.00000 1.00000
Rtb_to_modes> RTB block-file is being read.
Rtb_to_modes> 9342 lines found in RTB file.
Norm of eigenvectors in cartesian coordinates (one expected):
1.00003 0.99998 0.99999 1.00002 0.99999
1.00003 0.99994 1.00001 0.99994 1.00000
0.99996 0.99992 0.99999 0.99998 0.99999
0.99998 1.00003 0.99998 1.00000 1.00000
0.99998 1.00004 1.00006 1.00000 0.99998
1.00000 0.99997 1.00002 1.00000 1.00000
Orthogonality of first eigenvectors (zero expected):
Vector 2: 0.000
Vector 3:-0.000-0.000
Vector 4: 0.000-0.000-0.000
Vector 5:-0.000-0.000-0.000-0.000
Vector 6:-0.000-0.000-0.000-0.000-0.000
Vector 7:-0.000-0.000-0.000-0.000 0.000 0.000
Vector 8: 0.000-0.000 0.000-0.000 0.000-0.000-0.000
Vector 9:-0.000 0.000 0.000 0.000 0.000 0.000 0.000-0.000
Vector 10:-0.000 0.000 0.000-0.000 0.000 0.000 0.000 0.000-0.000
Rtb_to_modes> 30 eigenvectors saved.
Rtb_to_modes> Normal end.
Diagrtb> Normal end.
B-factor analysis
Bfactors> Version 1.22, Bordeaux.
Getnam> Eigenvector filename ?
Getnam> 221209044421126344.eigenfacs
Openam> file on opening on unit 10:
221209044421126344.eigenfacs
Getnam> Corresponding pdb filename ?
Getnam> 221209044421126344.atom
Openam> file on opening on unit 11:
221209044421126344.atom
Getnum> Number of skipped eigenvectors ?
Getnum> 0
Getnum> Number of usefull eigenvectors ?
Getnum> 10000
%Getnum-Err: number larger than 106 This is not allowed. Sorry.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 5
First residue number = 317
Last residue number = 322
Number of atoms found = 519
Mean number per residue = 103.8
Rdmodfacs> Old Blzpack file format detected.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 1
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9986E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 2
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9987E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 3
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9991E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 4
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9995E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 5
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0000E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 6
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0000E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 7
Rdmodfacs> Valeur propre du vecteur en lecture: 24.88
Rdmodfacs> Numero du vecteur CERFACS en lecture: 8
Rdmodfacs> Valeur propre du vecteur en lecture: 27.53
Rdmodfacs> Numero du vecteur CERFACS en lecture: 9
Rdmodfacs> Valeur propre du vecteur en lecture: 70.76
Rdmodfacs> Numero du vecteur CERFACS en lecture: 10
Rdmodfacs> Valeur propre du vecteur en lecture: 87.33
Rdmodfacs> Numero du vecteur CERFACS en lecture: 11
Rdmodfacs> Valeur propre du vecteur en lecture: 105.8
Rdmodfacs> Numero du vecteur CERFACS en lecture: 12
Rdmodfacs> Valeur propre du vecteur en lecture: 112.3
Rdmodfacs> Numero du vecteur CERFACS en lecture: 13
Rdmodfacs> Valeur propre du vecteur en lecture: 132.9
Rdmodfacs> Numero du vecteur CERFACS en lecture: 14
Rdmodfacs> Valeur propre du vecteur en lecture: 157.8
Rdmodfacs> Numero du vecteur CERFACS en lecture: 15
Rdmodfacs> Valeur propre du vecteur en lecture: 161.9
Rdmodfacs> Numero du vecteur CERFACS en lecture: 16
Rdmodfacs> Valeur propre du vecteur en lecture: 180.2
Rdmodfacs> Numero du vecteur CERFACS en lecture: 17
Rdmodfacs> Valeur propre du vecteur en lecture: 187.1
Rdmodfacs> Numero du vecteur CERFACS en lecture: 18
Rdmodfacs> Valeur propre du vecteur en lecture: 211.3
Rdmodfacs> Numero du vecteur CERFACS en lecture: 19
Rdmodfacs> Valeur propre du vecteur en lecture: 226.7
Rdmodfacs> Numero du vecteur CERFACS en lecture: 20
Rdmodfacs> Valeur propre du vecteur en lecture: 229.4
Rdmodfacs> Numero du vecteur CERFACS en lecture: 21
Rdmodfacs> Valeur propre du vecteur en lecture: 240.2
Rdmodfacs> Numero du vecteur CERFACS en lecture: 22
Rdmodfacs> Valeur propre du vecteur en lecture: 253.3
Rdmodfacs> Numero du vecteur CERFACS en lecture: 23
Rdmodfacs> Valeur propre du vecteur en lecture: 273.9
Rdmodfacs> Numero du vecteur CERFACS en lecture: 24
Rdmodfacs> Valeur propre du vecteur en lecture: 295.7
Rdmodfacs> Numero du vecteur CERFACS en lecture: 25
Rdmodfacs> Valeur propre du vecteur en lecture: 298.9
Rdmodfacs> Numero du vecteur CERFACS en lecture: 26
Rdmodfacs> Valeur propre du vecteur en lecture: 324.4
Rdmodfacs> Numero du vecteur CERFACS en lecture: 27
Rdmodfacs> Valeur propre du vecteur en lecture: 382.2
Rdmodfacs> Numero du vecteur CERFACS en lecture: 28
Rdmodfacs> Valeur propre du vecteur en lecture: 420.0
Rdmodfacs> Numero du vecteur CERFACS en lecture: 29
Rdmodfacs> Valeur propre du vecteur en lecture: 447.3
Rdmodfacs> Numero du vecteur CERFACS en lecture: 30
Rdmodfacs> Valeur propre du vecteur en lecture: 478.9
Bfactors> 30 vectors, 1557 coordinates in file.
%Bfactors-Wn> All vectors required were not found in vector file.
Openam> file on opening on unit 12:
bfactors.pred
Bfactors> Best zero-eigenvalue found : 0.000000
Bfactors> 6 eigenvalues less than : 0.000000
Bfactors> Lowest non-zero eigenvalue : 24.880000
Bfactors> 24 eigenvectors will be considered.
Bfactors> Rotation-Tranlation modes are skipped.
Bfactors> Mass-weighted B-factors are computed.
(CHARMM units assumed for eigenvalues)
%Bfactors-Wn> 0 negative values found in the B-factors column of pdb file.
%Bfactors-Wn> So, only mass-weighted predicted B-factors will be saved.
(CHARMM units assumed for eigenvalues)
Bfactors> Normal end.
check_modes
Chkmod> Version 1.00, Bordeaux.
Getnam> Eigenvector filename ?
Getnam> 221209044421126344.eigenfacs
Openam> file on opening on unit 10:
221209044421126344.eigenfacs
Rdmodfacs> Old Blzpack file format detected.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 1
Rdmodfacs> Frequence du vecteur en lecture: 3.4336E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 2
Rdmodfacs> Frequence du vecteur en lecture: 3.4336E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 3
Rdmodfacs> Frequence du vecteur en lecture: 3.4337E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 4
Rdmodfacs> Frequence du vecteur en lecture: 3.4337E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 5
Rdmodfacs> Frequence du vecteur en lecture: 3.4338E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 6
Rdmodfacs> Frequence du vecteur en lecture: 3.4338E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 7
Rdmodfacs> Frequence du vecteur en lecture: 541.6
Rdmodfacs> Numero du vecteur CERFACS en lecture: 8
Rdmodfacs> Frequence du vecteur en lecture: 569.7
Rdmodfacs> Numero du vecteur CERFACS en lecture: 9
Rdmodfacs> Frequence du vecteur en lecture: 913.4
Rdmodfacs> Numero du vecteur CERFACS en lecture: 10
Rdmodfacs> Frequence du vecteur en lecture: 1015.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 11
Rdmodfacs> Frequence du vecteur en lecture: 1117.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 12
Rdmodfacs> Frequence du vecteur en lecture: 1151.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 13
Rdmodfacs> Frequence du vecteur en lecture: 1252.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 14
Rdmodfacs> Frequence du vecteur en lecture: 1364.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 15
Rdmodfacs> Frequence du vecteur en lecture: 1382.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 16
Rdmodfacs> Frequence du vecteur en lecture: 1458.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 17
Rdmodfacs> Frequence du vecteur en lecture: 1485.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 18
Rdmodfacs> Frequence du vecteur en lecture: 1578.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 19
Rdmodfacs> Frequence du vecteur en lecture: 1635.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 20
Rdmodfacs> Frequence du vecteur en lecture: 1645.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 21
Rdmodfacs> Frequence du vecteur en lecture: 1683.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 22
Rdmodfacs> Frequence du vecteur en lecture: 1728.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 23
Rdmodfacs> Frequence du vecteur en lecture: 1797.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 24
Rdmodfacs> Frequence du vecteur en lecture: 1867.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 25
Rdmodfacs> Frequence du vecteur en lecture: 1877.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 26
Rdmodfacs> Frequence du vecteur en lecture: 1956.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 27
Rdmodfacs> Frequence du vecteur en lecture: 2123.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 28
Rdmodfacs> Frequence du vecteur en lecture: 2225.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 29
Rdmodfacs> Frequence du vecteur en lecture: 2297.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 30
Rdmodfacs> Frequence du vecteur en lecture: 2376.
Chkmod> 30 vectors, 1557 coordinates in file.
Chkmod> That is: 519 cartesian points.
Openam> file on opening on unit 11:
Chkmod.res
Chkmod> Collectivity=f(frequency) to be written in this file.
%Chkmod-Wn> Norm of vector 7 is: 0.9999 (instead of 1.0000).
%Chkmod-Wn> Norm of vector 9 is: 0.9999 (instead of 1.0000).
%Chkmod-Wn> Norm of vector 12 is: 0.9998 (instead of 1.0000).
%Chkmod-Wn> Norm of vector 23 is: 1.0001 (instead of 1.0000).
Chkmod> Normal end.
0.0034 0.7381
0.0034 0.6571
0.0034 0.6991
0.0034 0.8781
0.0034 0.7709
0.0034 0.9548
541.6289 0.4716
569.7440 0.3462
913.4201 0.4255
1014.7484 0.4330
1116.9133 0.5796
1150.7117 0.4669
1251.8120 0.6397
1364.0495 0.6245
1381.6564 0.3708
1457.6526 0.6425
1485.2978 0.7344
1578.4338 0.6470
1634.9422 0.5570
1644.6494 0.6560
1682.9187 0.6957
1728.2009 0.6779
1797.1017 0.6895
1867.2493 0.6137
1877.3256 0.7689
1955.7668 0.6410
2122.8631 0.7171
2225.3651 0.6335
2296.5510 0.5669
2376.2879 0.5061
getting mode 7
running: ../../bin/get_modes.sh 221209044421126344 7 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 7
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 8
running: ../../bin/get_modes.sh 221209044421126344 8 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 8
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 9
running: ../../bin/get_modes.sh 221209044421126344 9 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 9
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 10
running: ../../bin/get_modes.sh 221209044421126344 10 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 10
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 11
running: ../../bin/get_modes.sh 221209044421126344 11 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 11
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 12
running: ../../bin/get_modes.sh 221209044421126344 12 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 12
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 13
running: ../../bin/get_modes.sh 221209044421126344 13 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 13
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 14
running: ../../bin/get_modes.sh 221209044421126344 14 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 14
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 15
running: ../../bin/get_modes.sh 221209044421126344 15 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 15
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 16
running: ../../bin/get_modes.sh 221209044421126344 16 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 16
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 17
running: ../../bin/get_modes.sh 221209044421126344 17 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 17
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.17.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.17.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.17.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 18
running: ../../bin/get_modes.sh 221209044421126344 18 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 18
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.18.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.18.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.18.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 19
running: ../../bin/get_modes.sh 221209044421126344 19 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 19
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.19.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.19.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.19.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 20
running: ../../bin/get_modes.sh 221209044421126344 20 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 20
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.20.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.20.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.20.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 21
running: ../../bin/get_modes.sh 221209044421126344 21 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 21
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.21.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.21.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.21.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 22
running: ../../bin/get_modes.sh 221209044421126344 22 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 22
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.22.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.22.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.22.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 23
running: ../../bin/get_modes.sh 221209044421126344 23 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 23
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.23.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.23.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.23.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 24
running: ../../bin/get_modes.sh 221209044421126344 24 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 24
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.24.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.24.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.24.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 25
running: ../../bin/get_modes.sh 221209044421126344 25 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 25
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.25.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.25.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.25.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 26
running: ../../bin/get_modes.sh 221209044421126344 26 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 26
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.26.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.26.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.26.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 27
running: ../../bin/get_modes.sh 221209044421126344 27 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 27
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.27.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.27.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.27.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 28
running: ../../bin/get_modes.sh 221209044421126344 28 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 28
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.28.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.28.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.28.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 29
running: ../../bin/get_modes.sh 221209044421126344 29 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 29
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.29.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.29.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.29.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 30
running: ../../bin/get_modes.sh 221209044421126344 30 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 30
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.30.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.30.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.30.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 31
running: ../../bin/get_modes.sh 221209044421126344 31 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 31
calculating perturbed structure for DQ=-100
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=-20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=0
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=20
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=40
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=60
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=80
221209044421126344.eigenfacs
221209044421126344.atom
calculating perturbed structure for DQ=100
221209044421126344.eigenfacs
221209044421126344.atom
making animated gifs
11 models are in 221209044421126344.31.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.31.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 221209044421126344.31.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
221209044421126344.10.pdb
221209044421126344.11.pdb
221209044421126344.12.pdb
221209044421126344.13.pdb
221209044421126344.14.pdb
221209044421126344.15.pdb
221209044421126344.16.pdb
221209044421126344.17.pdb
221209044421126344.18.pdb
221209044421126344.19.pdb
221209044421126344.20.pdb
221209044421126344.21.pdb
221209044421126344.22.pdb
221209044421126344.23.pdb
221209044421126344.24.pdb
221209044421126344.25.pdb
221209044421126344.26.pdb
221209044421126344.27.pdb
221209044421126344.28.pdb
221209044421126344.29.pdb
221209044421126344.30.pdb
221209044421126344.31.pdb
221209044421126344.7.pdb
221209044421126344.8.pdb
221209044421126344.9.pdb
STDERR:
real 0m0.239s
user 0m0.180s
sys 0m0.056s
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If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.
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