Should you encounter any unexpected behaviour,
please let us know.

STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 220207192319103858.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 220207192319103858.atom to be opened.

 Openam> File opened: 220207192319103858.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   3742
            First residue number     =     29
            Last  residue number     =    113
            Number of atoms found    =  29489
            Mean number per residue  =      7.9

 Pdbmat> Coordinate statistics: 
 =   313.063488 +/-    28.016609 From:   247.116000 To:   387.809000
 =   305.273581 +/-    24.730167 From:   228.688000 To:   366.172000
 =   287.501001 +/-    45.043296 From:   187.526000 To:   393.853000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is  -2.8734 % Filled.
 Pdbmat>     10968288  non-zero elements.
 Pdbmat>      1199246 atom-atom interactions.

 Pdbmat> Number per atom=     81.34 +/-     21.71
         Maximum number =    132
         Minimum number =     11

 Pdbmat> Matrix trace   = 2.398492E+07
 Pdbmat> Larger element =  501.525    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
automatic determination of NRBL (NRBL = nresidues/200 + 1)
3742 non-zero elements, NRBL set to 19
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 220207192319103858.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =         19
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 220207192319103858.atom to be opened.

 Openam> file on opening on unit     11:
 220207192319103858.atom                                                                                                         

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 29489 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>    19 residue(s) per block.
 Blocpdb>  3742 residues.
 Blocpdb>   157 atoms in block      1
 Block first atom:      1
 Blocpdb>   167 atoms in block      2
 Block first atom:    158
 Blocpdb>    30 atoms in block      3
 Block first atom:    325
 Blocpdb>   155 atoms in block      4
 Block first atom:    355
 Blocpdb>   152 atoms in block      5
 Block first atom:    510
 Blocpdb>   142 atoms in block      6
 Block first atom:    662
 Blocpdb>   102 atoms in block      7
 Block first atom:    804
 Blocpdb>   158 atoms in block      8
 Block first atom:    906
 Blocpdb>    33 atoms in block      9
 Block first atom:   1064
 Blocpdb>   169 atoms in block     10
 Block first atom:   1097
 Blocpdb>   150 atoms in block     11
 Block first atom:   1266
 Blocpdb>   142 atoms in block     12
 Block first atom:   1416
 Blocpdb>   167 atoms in block     13
 Block first atom:   1558
 Blocpdb>   133 atoms in block     14
 Block first atom:   1725
 Blocpdb>   156 atoms in block     15
 Block first atom:   1858
 Blocpdb>   146 atoms in block     16
 Block first atom:   2014
 Blocpdb>   165 atoms in block     17
 Block first atom:   2160
 Blocpdb>   145 atoms in block     18
 Block first atom:   2325
 Blocpdb>   150 atoms in block     19
 Block first atom:   2470
 Blocpdb>   144 atoms in block     20
 Block first atom:   2620
 Blocpdb>   149 atoms in block     21
 Block first atom:   2764
 Blocpdb>   155 atoms in block     22
 Block first atom:   2913
 Blocpdb>   165 atoms in block     23
 Block first atom:   3068
 Blocpdb>   143 atoms in block     24
 Block first atom:   3233
 Blocpdb>   154 atoms in block     25
 Block first atom:   3376
 Blocpdb>   128 atoms in block     26
 Block first atom:   3530
 Blocpdb>   144 atoms in block     27
 Block first atom:   3658
 Blocpdb>   155 atoms in block     28
 Block first atom:   3802
 Blocpdb>   146 atoms in block     29
 Block first atom:   3957
 Blocpdb>   127 atoms in block     30
 Block first atom:   4103
 Blocpdb>   117 atoms in block     31
 Block first atom:   4230
 Blocpdb>   141 atoms in block     32
 Block first atom:   4347
 Blocpdb>   108 atoms in block     33
 Block first atom:   4488
 Blocpdb>   138 atoms in block     34
 Block first atom:   4596
 Blocpdb>   142 atoms in block     35
 Block first atom:   4734
 Blocpdb>   137 atoms in block     36
 Block first atom:   4876
 Blocpdb>   149 atoms in block     37
 Block first atom:   5013
 Blocpdb>   146 atoms in block     38
 Block first atom:   5162
 Blocpdb>   157 atoms in block     39
 Block first atom:   5308
 Blocpdb>   155 atoms in block     40
 Block first atom:   5465
 Blocpdb>    39 atoms in block     41
 Block first atom:   5620
 Blocpdb>   149 atoms in block     42
 Block first atom:   5659
 Blocpdb>   125 atoms in block     43
 Block first atom:   5808
 Blocpdb>   148 atoms in block     44
 Block first atom:   5933
 Blocpdb>   154 atoms in block     45
 Block first atom:   6081
 Blocpdb>   133 atoms in block     46
 Block first atom:   6235
 Blocpdb>   142 atoms in block     47
 Block first atom:   6368
 Blocpdb>   142 atoms in block     48
 Block first atom:   6510
 Blocpdb>   151 atoms in block     49
 Block first atom:   6652
 Blocpdb>   146 atoms in block     50
 Block first atom:   6803
 Blocpdb>   140 atoms in block     51
 Block first atom:   6949
 Blocpdb>   149 atoms in block     52
 Block first atom:   7089
 Blocpdb>   146 atoms in block     53
 Block first atom:   7238
 Blocpdb>   148 atoms in block     54
 Block first atom:   7384
 Blocpdb>   168 atoms in block     55
 Block first atom:   7532
 Blocpdb>   141 atoms in block     56
 Block first atom:   7700
 Blocpdb>    56 atoms in block     57
 Block first atom:   7841
 Blocpdb>    52 atoms in block     58
 Block first atom:   7897
 Blocpdb>   161 atoms in block     59
 Block first atom:   7949
 Blocpdb>   159 atoms in block     60
 Block first atom:   8110
 Blocpdb>    11 atoms in block     61
 Block first atom:   8269
 Blocpdb>   148 atoms in block     62
 Block first atom:   8280
 Blocpdb>   151 atoms in block     63
 Block first atom:   8428
 Blocpdb>   149 atoms in block     64
 Block first atom:   8579
 Blocpdb>    77 atoms in block     65
 Block first atom:   8728
 Blocpdb>   165 atoms in block     66
 Block first atom:   8805
 Blocpdb>    13 atoms in block     67
 Block first atom:   8970
 Blocpdb>   174 atoms in block     68
 Block first atom:   8983
 Blocpdb>    63 atoms in block     69
 Block first atom:   9157
 Blocpdb>   140 atoms in block     70
 Block first atom:   9220
 Blocpdb>    90 atoms in block     71
 Block first atom:   9360
 Blocpdb>   164 atoms in block     72
 Block first atom:   9450
 Blocpdb>   135 atoms in block     73
 Block first atom:   9614
 Blocpdb>   155 atoms in block     74
 Block first atom:   9749
 Blocpdb>   149 atoms in block     75
 Block first atom:   9904
 Blocpdb>   161 atoms in block     76
 Block first atom:  10053
 Blocpdb>   142 atoms in block     77
 Block first atom:  10214
 Blocpdb>   149 atoms in block     78
 Block first atom:  10356
 Blocpdb>   149 atoms in block     79
 Block first atom:  10505
 Blocpdb>   148 atoms in block     80
 Block first atom:  10654
 Blocpdb>   151 atoms in block     81
 Block first atom:  10802
 Blocpdb>   169 atoms in block     82
 Block first atom:  10953
 Blocpdb>   144 atoms in block     83
 Block first atom:  11122
 Blocpdb>   154 atoms in block     84
 Block first atom:  11266
 Blocpdb>   126 atoms in block     85
 Block first atom:  11420
 Blocpdb>   149 atoms in block     86
 Block first atom:  11546
 Blocpdb>   148 atoms in block     87
 Block first atom:  11695
 Blocpdb>   149 atoms in block     88
 Block first atom:  11843
 Blocpdb>   129 atoms in block     89
 Block first atom:  11992
 Blocpdb>   123 atoms in block     90
 Block first atom:  12121
 Blocpdb>   141 atoms in block     91
 Block first atom:  12244
 Blocpdb>   108 atoms in block     92
 Block first atom:  12385
 Blocpdb>   138 atoms in block     93
 Block first atom:  12493
 Blocpdb>   142 atoms in block     94
 Block first atom:  12631
 Blocpdb>   137 atoms in block     95
 Block first atom:  12773
 Blocpdb>   149 atoms in block     96
 Block first atom:  12910
 Blocpdb>   146 atoms in block     97
 Block first atom:  13059
 Blocpdb>   157 atoms in block     98
 Block first atom:  13205
 Blocpdb>   155 atoms in block     99
 Block first atom:  13362
 Blocpdb>    39 atoms in block    100
 Block first atom:  13517
 Blocpdb>   149 atoms in block    101
 Block first atom:  13556
 Blocpdb>   125 atoms in block    102
 Block first atom:  13705
 Blocpdb>   148 atoms in block    103
 Block first atom:  13830
 Blocpdb>   154 atoms in block    104
 Block first atom:  13978
 Blocpdb>   133 atoms in block    105
 Block first atom:  14132
 Blocpdb>   142 atoms in block    106
 Block first atom:  14265
 Blocpdb>   142 atoms in block    107
 Block first atom:  14407
 Blocpdb>   151 atoms in block    108
 Block first atom:  14549
 Blocpdb>   146 atoms in block    109
 Block first atom:  14700
 Blocpdb>   140 atoms in block    110
 Block first atom:  14846
 Blocpdb>   149 atoms in block    111
 Block first atom:  14986
 Blocpdb>   146 atoms in block    112
 Block first atom:  15135
 Blocpdb>   148 atoms in block    113
 Block first atom:  15281
 Blocpdb>   168 atoms in block    114
 Block first atom:  15429
 Blocpdb>   141 atoms in block    115
 Block first atom:  15597
 Blocpdb>    56 atoms in block    116
 Block first atom:  15738
 Blocpdb>   150 atoms in block    117
 Block first atom:  15794
 Blocpdb>   156 atoms in block    118
 Block first atom:  15944
 Blocpdb>   166 atoms in block    119
 Block first atom:  16100
 Blocpdb>   155 atoms in block    120
 Block first atom:  16266
 Blocpdb>   152 atoms in block    121
 Block first atom:  16421
 Blocpdb>   142 atoms in block    122
 Block first atom:  16573
 Blocpdb>   114 atoms in block    123
 Block first atom:  16715
 Blocpdb>   165 atoms in block    124
 Block first atom:  16829
 Blocpdb>    48 atoms in block    125
 Block first atom:  16994
 Blocpdb>   174 atoms in block    126
 Block first atom:  17042
 Blocpdb>   147 atoms in block    127
 Block first atom:  17216
 Blocpdb>   151 atoms in block    128
 Block first atom:  17363
 Blocpdb>    40 atoms in block    129
 Block first atom:  17514
 Blocpdb>   134 atoms in block    130
 Block first atom:  17554
 Blocpdb>   153 atoms in block    131
 Block first atom:  17688
 Blocpdb>   142 atoms in block    132
 Block first atom:  17841
 Blocpdb>   154 atoms in block    133
 Block first atom:  17983
 Blocpdb>   151 atoms in block    134
 Block first atom:  18137
 Blocpdb>   159 atoms in block    135
 Block first atom:  18288
 Blocpdb>   144 atoms in block    136
 Block first atom:  18447
 Blocpdb>   155 atoms in block    137
 Block first atom:  18591
 Blocpdb>   142 atoms in block    138
 Block first atom:  18746
 Blocpdb>   152 atoms in block    139
 Block first atom:  18888
 Blocpdb>   162 atoms in block    140
 Block first atom:  19040
 Blocpdb>   151 atoms in block    141
 Block first atom:  19202
 Blocpdb>   152 atoms in block    142
 Block first atom:  19353
 Blocpdb>   151 atoms in block    143
 Block first atom:  19505
 Blocpdb>   125 atoms in block    144
 Block first atom:  19656
 Blocpdb>   139 atoms in block    145
 Block first atom:  19781
 Blocpdb>   158 atoms in block    146
 Block first atom:  19920
 Blocpdb>    23 atoms in block    147
 Block first atom:  20078
 Blocpdb>   130 atoms in block    148
 Block first atom:  20101
 Blocpdb>   138 atoms in block    149
 Block first atom:  20231
 Blocpdb>   141 atoms in block    150
 Block first atom:  20369
 Blocpdb>   108 atoms in block    151
 Block first atom:  20510
 Blocpdb>   138 atoms in block    152
 Block first atom:  20618
 Blocpdb>   142 atoms in block    153
 Block first atom:  20756
 Blocpdb>   137 atoms in block    154
 Block first atom:  20898
 Blocpdb>   149 atoms in block    155
 Block first atom:  21035
 Blocpdb>   146 atoms in block    156
 Block first atom:  21184
 Blocpdb>   157 atoms in block    157
 Block first atom:  21330
 Blocpdb>   155 atoms in block    158
 Block first atom:  21487
 Blocpdb>    39 atoms in block    159
 Block first atom:  21642
 Blocpdb>   149 atoms in block    160
 Block first atom:  21681
 Blocpdb>   125 atoms in block    161
 Block first atom:  21830
 Blocpdb>   148 atoms in block    162
 Block first atom:  21955
 Blocpdb>   154 atoms in block    163
 Block first atom:  22103
 Blocpdb>   133 atoms in block    164
 Block first atom:  22257
 Blocpdb>   142 atoms in block    165
 Block first atom:  22390
 Blocpdb>   142 atoms in block    166
 Block first atom:  22532
 Blocpdb>   151 atoms in block    167
 Block first atom:  22674
 Blocpdb>   146 atoms in block    168
 Block first atom:  22825
 Blocpdb>   140 atoms in block    169
 Block first atom:  22971
 Blocpdb>   149 atoms in block    170
 Block first atom:  23111
 Blocpdb>   146 atoms in block    171
 Block first atom:  23260
 Blocpdb>   148 atoms in block    172
 Block first atom:  23406
 Blocpdb>   168 atoms in block    173
 Block first atom:  23554
 Blocpdb>   141 atoms in block    174
 Block first atom:  23722
 Blocpdb>    56 atoms in block    175
 Block first atom:  23863
 Blocpdb>   129 atoms in block    176
 Block first atom:  23919
 Blocpdb>   147 atoms in block    177
 Block first atom:  24048
 Blocpdb>   140 atoms in block    178
 Block first atom:  24195
 Blocpdb>   150 atoms in block    179
 Block first atom:  24335
 Blocpdb>   172 atoms in block    180
 Block first atom:  24485
 Blocpdb>   234 atoms in block    181
 Block first atom:  24657
 Blocpdb>   128 atoms in block    182
 Block first atom:  24891
 Blocpdb>   140 atoms in block    183
 Block first atom:  25019
 Blocpdb>   141 atoms in block    184
 Block first atom:  25159
 Blocpdb>   147 atoms in block    185
 Block first atom:  25300
 Blocpdb>   169 atoms in block    186
 Block first atom:  25447
 Blocpdb>   160 atoms in block    187
 Block first atom:  25616
 Blocpdb>   129 atoms in block    188
 Block first atom:  25776
 Blocpdb>   147 atoms in block    189
 Block first atom:  25905
 Blocpdb>   140 atoms in block    190
 Block first atom:  26052
 Blocpdb>   150 atoms in block    191
 Block first atom:  26192
 Blocpdb>   172 atoms in block    192
 Block first atom:  26342
 Blocpdb>   234 atoms in block    193
 Block first atom:  26514
 Blocpdb>   128 atoms in block    194
 Block first atom:  26748
 Blocpdb>   140 atoms in block    195
 Block first atom:  26876
 Blocpdb>   141 atoms in block    196
 Block first atom:  27016
 Blocpdb>   147 atoms in block    197
 Block first atom:  27157
 Blocpdb>   169 atoms in block    198
 Block first atom:  27304
 Blocpdb>   160 atoms in block    199
 Block first atom:  27473
 Blocpdb>   129 atoms in block    200
 Block first atom:  27633
 Blocpdb>   147 atoms in block    201
 Block first atom:  27762
 Blocpdb>   140 atoms in block    202
 Block first atom:  27909
 Blocpdb>   150 atoms in block    203
 Block first atom:  28049
 Blocpdb>   172 atoms in block    204
 Block first atom:  28199
 Blocpdb>   234 atoms in block    205
 Block first atom:  28371
 Blocpdb>   128 atoms in block    206
 Block first atom:  28605
 Blocpdb>   140 atoms in block    207
 Block first atom:  28733
 Blocpdb>   141 atoms in block    208
 Block first atom:  28873
 Blocpdb>   147 atoms in block    209
 Block first atom:  29014
 Blocpdb>   169 atoms in block    210
 Block first atom:  29161
 Blocpdb>   160 atoms in block    211
 Block first atom:  29329

 Blocpdb>   211 blocks.

 Blocpdb> At most,    234 atoms in each of them.
 Blocpdb> At least,    11 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IRWKMX up to:     62596639 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.175s
user	0m0.172s
sys	0m0.000s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.