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CA strain for EXAMPLE1

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 -0.0212
GLN 2ILE 3 -0.0019
ILE 3THR 4 -0.0024
THR 4LEU 5 0.0035
LEU 5TRP 6 -0.0019
TRP 6GLN 7 0.0048
GLN 7ARG 8 -0.0006
ARG 8PRO 9 -0.0011
PRO 9LEU 10 -0.0015
LEU 10VAL 11 0.0076
VAL 11THR 12 -0.0095
THR 12ILE 13 0.0001
ILE 13LYS 14 0.0008
LYS 14ILE 15 -0.0052
ILE 15GLY 16 0.0005
GLY 16GLY 17 -0.0020
GLY 17GLN 18 -0.0030
GLN 18LEU 19 -0.0018
LEU 19LYS 20 -0.0009
LYS 20GLU 21 0.0031
GLU 21ALA 22 -0.0009
ALA 22LEU 23 -0.0033
LEU 23LEU 24 0.0104
LEU 24ASP 25 -0.0116
ASP 25THR 26 0.0312
THR 26GLY 27 0.0171
GLY 27ALA 28 0.0263
ALA 28ASP 29 -0.0056
ASP 29ASP 30 0.0135
ASP 30THR 31 -0.0055
THR 31VAL 32 0.0160
VAL 32LEU 33 0.0209
LEU 33GLU 34 -0.0086
GLU 34GLU 35 0.0179
GLU 35MET 36 -0.0184
MET 36SER 37 0.0131
SER 37LEU 38 0.0006
LEU 38PRO 39 0.0007
PRO 39GLY 40 0.0047
GLY 40ARG 41 0.0065
ARG 41TRP 42 -0.0018
TRP 42LYS 43 0.0065
LYS 43PRO 44 -0.0265
PRO 44LYS 45 0.0087
LYS 45MET 46 -0.0053
MET 46ILE 47 0.0111
ILE 47GLY 48 0.0943
GLY 48GLY 49 0.0376
GLY 49ILE 50 0.0623
ILE 50GLY 51 -0.0201
GLY 51GLY 52 0.0071
GLY 52PHE 53 -0.0466
PHE 53ILE 54 0.0095
ILE 54LYS 55 -0.0817
LYS 55VAL 56 -0.0088
VAL 56ARG 57 -0.0174
ARG 57GLN 58 -0.0107
GLN 58TYR 59 -0.0025
TYR 59ASP 60 0.0016
ASP 60GLN 61 -0.0039
GLN 61ILE 62 0.0042
ILE 62LEU 63 -0.0105
LEU 63ILE 64 0.0032
ILE 64GLU 65 -0.0001
GLU 65ILE 66 -0.0014
ILE 66CYS 67 -0.0069
CYS 67GLY 68 -0.0010
GLY 68HIS 69 -0.0017
HIS 69LYS 70 0.0009
LYS 70ALA 71 0.0048
ALA 71ILE 72 -0.0057
ILE 72GLY 73 0.0083
GLY 73THR 74 0.0162
THR 74VAL 75 -0.0042
VAL 75LEU 76 0.0204
LEU 76VAL 77 0.0076
VAL 77GLY 78 -0.0065
GLY 78PRO 79 0.0097
PRO 79THR 80 0.0270
THR 80PRO 81 -0.0085
PRO 81VAL 82 0.0110
VAL 82ASN 83 -0.0003
ASN 83ILE 84 0.0011
ILE 84ILE 85 0.0100
ILE 85GLY 86 -0.0016
GLY 86ARG 87 0.0013
ARG 87ASN 88 -0.0131
ASN 88LEU 89 0.0074
LEU 89LEU 90 -0.0104
LEU 90THR 91 -0.0027
THR 91GLN 92 -0.0033
GLN 92ILE 93 0.0030
ILE 93GLY 94 -0.0248
GLY 94CYS 95 0.0186
CYS 95THR 96 -0.0284
THR 96LEU 97 -0.0034
LEU 97ASN 98 0.0448
ASN 98PHE 99 -0.0050

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.