This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASP 1
ALA 2
-0.0410
ALA 2
GLU 3
-0.0706
GLU 3
PHE 4
0.0486
PHE 4
ARG 5
0.0624
ARG 5
HIS 6
-0.3528
HIS 6
ASP 7
-0.0007
ASP 7
SER 8
-0.0905
SER 8
GLY 9
0.0940
GLY 9
TYR 10
-0.0627
TYR 10
GLU 11
0.0440
GLU 11
VAL 12
0.0877
VAL 12
HIS 13
0.0952
HIS 13
HIS 14
0.1218
HIS 14
GLN 15
0.0393
GLN 15
LYS 16
0.1139
LYS 16
LEU 17
0.0180
LEU 17
VAL 18
0.2930
VAL 18
PHE 19
0.0160
PHE 19
PHE 20
-0.1565
PHE 20
ALA 21
0.5351
ALA 21
GLU 22
-0.2477
GLU 22
ASP 23
-0.0225
ASP 23
VAL 24
0.1579
VAL 24
GLY 25
-0.1016
GLY 25
SER 26
0.1878
SER 26
ASN 27
-0.0072
ASN 27
LYS 28
-0.0610
LYS 28
GLY 29
-0.0153
GLY 29
ALA 30
0.0058
ALA 30
ILE 31
-0.1259
ILE 31
ILE 32
0.0126
ILE 32
GLY 33
0.2577
GLY 33
LEU 34
-0.3835
LEU 34
MET 35
0.2065
MET 35
VAL 36
-0.0283
VAL 36
GLY 37
0.2772
GLY 37
GLY 38
0.1742
GLY 38
VAL 39
0.1168
VAL 39
VAL 40
-0.0286
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.