This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASP 1
ALA 2
-0.0187
ALA 2
GLU 3
-0.1003
GLU 3
PHE 4
-0.1524
PHE 4
ARG 5
-0.0109
ARG 5
HIS 6
0.1738
HIS 6
ASP 7
0.0048
ASP 7
SER 8
-0.2372
SER 8
GLY 9
0.3668
GLY 9
TYR 10
0.4125
TYR 10
GLU 11
-0.2070
GLU 11
VAL 12
-0.0750
VAL 12
HIS 13
0.2764
HIS 13
HIS 14
-0.8256
HIS 14
GLN 15
0.0225
GLN 15
LYS 16
0.0095
LYS 16
LEU 17
0.0602
LEU 17
VAL 18
-0.1756
VAL 18
PHE 19
-0.0400
PHE 19
PHE 20
-0.0203
PHE 20
ALA 21
0.1256
ALA 21
GLU 22
-0.5056
GLU 22
ASP 23
0.0588
ASP 23
VAL 24
-0.1986
VAL 24
GLY 25
0.4629
GLY 25
SER 26
-0.1163
SER 26
ASN 27
-0.0009
ASN 27
LYS 28
-0.1283
LYS 28
GLY 29
-0.0434
GLY 29
ALA 30
-0.1178
ALA 30
ILE 31
-0.1605
ILE 31
ILE 32
-0.0127
ILE 32
GLY 33
-0.1700
GLY 33
LEU 34
-0.1643
LEU 34
MET 35
-0.0577
MET 35
VAL 36
-0.1101
VAL 36
GLY 37
0.3031
GLY 37
GLY 38
0.2703
GLY 38
VAL 39
0.2147
VAL 39
VAL 40
0.0271
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.