Should you encounter any unexpected behaviour,
please let us know.

* bacteriorhodopsin *

CA strain for 2404222055381936730

--- normal mode 7 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
ILE 4 THR 5 0.0000

THR 5 GLY 6 0.0001

GLY 6 ARG 7 -0.0002

ARG 7 PRO 8 0.0005

PRO 8 GLU 9 0.0003

GLU 9 TRP 10 0.0008

TRP 10 ILE 11 0.0003

ILE 11 TRP 12 0.0008

TRP 12 LEU 13 -0.0001

LEU 13 ALA 14 -0.0007

ALA 14 LEU 15 -0.0002

LEU 15 GLY 16 0.0007

GLY 16 THR 17 0.0001

THR 17 ALA 18 -0.0019

ALA 18 LEU 19 0.0001

LEU 19 MET 20 0.0013

MET 20 GLY 21 -0.0005

GLY 21 LEU 22 -0.0035

LEU 22 GLY 23 0.0001

GLY 23 THR 24 0.0003

THR 24 LEU 25 -0.0002

LEU 25 TYR 26 0.0013

TYR 26 PHE 27 -0.0004

PHE 27 LEU 28 0.0023

LEU 28 VAL 29 -0.0004

VAL 29 LYS 30 0.0026

LYS 30 GLY 31 0.0002

GLY 31 MET 32 0.0039

MET 32 GLY 33 0.0002

GLY 33 VAL 34 -0.0046

VAL 34 SER 35 -0.0003

SER 35 ASP 36 -0.0031

ASP 36 PRO 37 0.0001

PRO 37 ASP 38 -0.0119

ASP 38 ALA 39 0.0002

ALA 39 LYS 40 0.0012

LYS 40 LYS 41 0.0001

LYS 41 PHE 42 -0.0017

PHE 42 TYR 43 0.0003

TYR 43 ALA 44 -0.0058

ALA 44 ILE 45 0.0002

ILE 45 THR 46 0.0018

THR 46 THR 47 -0.0000

THR 47 LEU 48 -0.0011

LEU 48 VAL 49 -0.0003

VAL 49 PRO 50 0.0007

PRO 50 ALA 51 -0.0003

ALA 51 ILE 52 -0.0025

ILE 52 ALA 53 -0.0001

ALA 53 PHE 54 -0.0003

PHE 54 THR 55 0.0002

THR 55 MET 56 -0.0008

MET 56 TYR 57 -0.0004

TYR 57 LEU 58 -0.0005

LEU 58 SER 59 -0.0003

SER 59 MET 60 0.0004

MET 60 LEU 61 0.0001

LEU 61 LEU 62 -0.0004

LEU 62 GLY 63 -0.0005

GLY 63 TYR 64 0.0000

TYR 64 GLY 65 -0.0002

GLY 65 LEU 66 0.0017

LEU 66 THR 67 0.0001

THR 67 MET 68 0.0027

MET 68 VAL 69 0.0001

VAL 69 PRO 70 0.0020

PRO 70 PHE 71 0.0004

PHE 71 GLY 72 0.0013

GLY 72 GLY 73 0.0002

GLY 73 GLU 74 -0.0015

GLU 74 GLN 75 -0.0000

GLN 75 ASN 76 -0.0046

ASN 76 PRO 77 0.0003

PRO 77 ILE 78 0.0011

ILE 78 TYR 79 -0.0003

TYR 79 TRP 80 0.0016

TRP 80 ALA 81 0.0003

ALA 81 ARG 82 -0.0007

ARG 82 TYR 83 0.0001

TYR 83 ALA 84 0.0028

ALA 84 ASP 85 -0.0002

ASP 85 TRP 86 -0.0011

TRP 86 LEU 87 0.0001

LEU 87 PHE 88 0.0059

PHE 88 THR 89 -0.0001

THR 89 THR 90 -0.0021

THR 90 PRO 91 0.0001

PRO 91 LEU 92 0.0036

LEU 92 LEU 93 0.0003

LEU 93 LEU 94 -0.0037

LEU 94 LEU 95 0.0001

LEU 95 ASP 96 0.0026

ASP 96 LEU 97 -0.0001

LEU 97 ALA 98 -0.0030

ALA 98 LEU 99 -0.0002

LEU 99 LEU 100 0.0044

LEU 100 VAL 101 -0.0002

VAL 101 ASP 102 0.0032

ASP 102 ALA 103 -0.0002

ALA 103 ASP 104 0.0026

ASP 104 GLN 105 0.0002

GLN 105 GLY 106 -0.0000

GLY 106 THR 107 -0.0003

THR 107 ILE 108 -0.0025

ILE 108 LEU 109 -0.0003

LEU 109 ALA 110 0.0023

ALA 110 LEU 111 0.0001

LEU 111 VAL 112 -0.0026

VAL 112 GLY 113 0.0002

GLY 113 ALA 114 0.0007

ALA 114 ASP 115 0.0002

ASP 115 GLY 116 -0.0027

GLY 116 ILE 117 -0.0002

ILE 117 MET 118 -0.0027

MET 118 ILE 119 0.0000

ILE 119 GLY 120 -0.0007

GLY 120 THR 121 -0.0001

THR 121 GLY 122 0.0014

GLY 122 LEU 123 0.0000

LEU 123 VAL 124 -0.0004

VAL 124 GLY 125 -0.0001

GLY 125 ALA 126 -0.0011

ALA 126 LEU 127 -0.0003

LEU 127 THR 128 -0.0002

THR 128 LYS 129 -0.0001

LYS 129 VAL 130 -0.0001

VAL 130 TYR 131 0.0001

TYR 131 SER 132 0.0009

SER 132 TYR 133 -0.0002

TYR 133 ARG 134 -0.0015

ARG 134 PHE 135 -0.0003

PHE 135 VAL 136 0.0016

VAL 136 TRP 137 0.0001

TRP 137 TRP 138 -0.0023

TRP 138 ALA 139 0.0003

ALA 139 ILE 140 0.0027

ILE 140 SER 141 0.0001

SER 141 THR 142 -0.0013

THR 142 ALA 143 0.0001

ALA 143 ALA 144 0.0020

ALA 144 MET 145 0.0004

MET 145 LEU 146 0.0010

LEU 146 TYR 147 0.0002

TYR 147 ILE 148 -0.0021

ILE 148 LEU 149 -0.0000

LEU 149 TYR 150 0.0032

TYR 150 VAL 151 -0.0001

VAL 151 LEU 152 -0.0017

LEU 152 PHE 153 0.0003

PHE 153 PHE 154 0.0011

PHE 154 GLY 155 0.0000

GLY 155 PHE 156 -0.0013

PHE 156 THR 157 -0.0000

THR 157 SER 158 0.0001

SER 158 LYS 159 0.0002

LYS 159 ALA 160 -0.0022

ALA 160 GLU 161 -0.0002

GLU 161 SER 162 -0.0032

SER 162 MET 163 -0.0002

MET 163 ARG 164 0.0406

ARG 164 PRO 165 0.0003

PRO 165 GLU 166 0.0224

GLU 166 VAL 167 0.0000

VAL 167 ALA 168 -0.0013

ALA 168 SER 169 -0.0001

SER 169 THR 170 0.0083

THR 170 PHE 171 -0.0000

PHE 171 LYS 172 -0.0001

LYS 172 VAL 173 -0.0004

VAL 173 LEU 174 0.0014

LEU 174 ARG 175 -0.0000

ARG 175 ASN 176 0.0026

ASN 176 VAL 177 0.0003

VAL 177 THR 178 -0.0034

THR 178 VAL 179 0.0002

VAL 179 VAL 180 0.0059

VAL 180 LEU 181 -0.0001

LEU 181 TRP 182 -0.0003

TRP 182 SER 183 0.0001

SER 183 ALA 184 0.0049

ALA 184 TYR 185 0.0002

TYR 185 PRO 186 -0.0035

PRO 186 VAL 187 0.0002

VAL 187 VAL 188 0.0040

VAL 188 TRP 189 0.0001

TRP 189 LEU 190 -0.0005

LEU 190 ILE 191 0.0001

ILE 191 GLY 192 0.0005

GLY 192 SER 193 0.0003

SER 193 GLU 194 0.0018

GLU 194 GLY 195 0.0001

GLY 195 ALA 196 0.0026

ALA 196 GLY 197 -0.0004

GLY 197 ILE 198 -0.0005

ILE 198 VAL 199 0.0002

VAL 199 PRO 200 0.0032

PRO 200 LEU 201 0.0003

LEU 201 ASN 202 -0.0012

ASN 202 ILE 203 0.0001

ILE 203 GLU 204 0.0015

GLU 204 THR 205 0.0001

THR 205 LEU 206 -0.0016

LEU 206 LEU 207 -0.0000

LEU 207 PHE 208 0.0017

PHE 208 MET 209 0.0004

MET 209 VAL 210 0.0009

VAL 210 LEU 211 -0.0001

LEU 211 ASP 212 0.0003

ASP 212 VAL 213 0.0003

VAL 213 SER 214 0.0042

SER 214 ALA 215 -0.0002

ALA 215 LYS 216 0.0020

LYS 216 VAL 217 0.0003

VAL 217 GLY 218 0.0064

GLY 218 PHE 219 -0.0001

PHE 219 GLY 220 -0.0026

GLY 220 LEU 221 -0.0002

LEU 221 ILE 222 0.0091

ILE 222 LEU 223 0.0002

LEU 223 LEU 224 0.0007

LEU 224 ARG 225 0.0001

ARG 225 SER 226 -0.0053

SER 226 ARG 227 0.0002

ARG 227 ALA 228 0.0106

ALA 228 ILE 229 0.0004

ILE 229 PHE 230 0.0234

PHE 230 GLY 231 0.0004

GLY 231 GLU 232 0.2341

GLU 232 ALA 233 0.0001

ALA 233 GLU 234 0.0305

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** bacteriorhodopsin ***

CA strain for 2404222055381936730

--- normal mode 7 ---

Should you encounter any unexpected behaviour,
please let us know.

* bacteriorhodopsin *