Should you encounter any unexpected behaviour,
please let us know.

* bacteriorhodopsin *

CA strain for 2404222055381936730

--- normal mode 10 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
ILE 4 THR 5 -0.0000

THR 5 GLY 6 -0.0028

GLY 6 ARG 7 -0.0001

ARG 7 PRO 8 0.0170

PRO 8 GLU 9 -0.0003

GLU 9 TRP 10 0.0133

TRP 10 ILE 11 -0.0001

ILE 11 TRP 12 0.0375

TRP 12 LEU 13 0.0003

LEU 13 ALA 14 -0.0108

ALA 14 LEU 15 -0.0003

LEU 15 GLY 16 0.0164

GLY 16 THR 17 -0.0003

THR 17 ALA 18 0.0166

ALA 18 LEU 19 -0.0001

LEU 19 MET 20 -0.0570

MET 20 GLY 21 0.0002

GLY 21 LEU 22 0.1054

LEU 22 GLY 23 -0.0002

GLY 23 THR 24 -0.0026

THR 24 LEU 25 -0.0001

LEU 25 TYR 26 0.1408

TYR 26 PHE 27 0.0002

PHE 27 LEU 28 -0.0294

LEU 28 VAL 29 -0.0000

VAL 29 LYS 30 0.0036

LYS 30 GLY 31 -0.0002

GLY 31 MET 32 0.0349

MET 32 GLY 33 0.0002

GLY 33 VAL 34 0.0277

VAL 34 SER 35 -0.0002

SER 35 ASP 36 -0.0625

ASP 36 PRO 37 0.0001

PRO 37 ASP 38 0.0129

ASP 38 ALA 39 0.0001

ALA 39 LYS 40 -0.0189

LYS 40 LYS 41 0.0002

LYS 41 PHE 42 -0.0434

PHE 42 TYR 43 -0.0000

TYR 43 ALA 44 0.0726

ALA 44 ILE 45 -0.0003

ILE 45 THR 46 -0.0398

THR 46 THR 47 0.0000

THR 47 LEU 48 0.1213

LEU 48 VAL 49 0.0001

VAL 49 PRO 50 -0.0551

PRO 50 ALA 51 0.0004

ALA 51 ILE 52 0.1179

ILE 52 ALA 53 -0.0002

ALA 53 PHE 54 -0.0418

PHE 54 THR 55 -0.0001

THR 55 MET 56 0.0782

MET 56 TYR 57 -0.0002

TYR 57 LEU 58 -0.0193

LEU 58 SER 59 0.0002

SER 59 MET 60 0.0147

MET 60 LEU 61 0.0000

LEU 61 LEU 62 0.0074

LEU 62 GLY 63 0.0002

GLY 63 TYR 64 -0.0402

TYR 64 GLY 65 0.0002

GLY 65 LEU 66 0.0911

LEU 66 THR 67 -0.0001

THR 67 MET 68 0.1260

MET 68 VAL 69 0.0001

VAL 69 PRO 70 0.0757

PRO 70 PHE 71 -0.0001

PHE 71 GLY 72 0.0388

GLY 72 GLY 73 -0.0002

GLY 73 GLU 74 -0.0170

GLU 74 GLN 75 0.0004

GLN 75 ASN 76 -0.0882

ASN 76 PRO 77 -0.0003

PRO 77 ILE 78 -0.0059

ILE 78 TYR 79 0.0003

TYR 79 TRP 80 -0.0301

TRP 80 ALA 81 0.0000

ALA 81 ARG 82 -0.0306

ARG 82 TYR 83 0.0004

TYR 83 ALA 84 0.0713

ALA 84 ASP 85 -0.0003

ASP 85 TRP 86 -0.0574

TRP 86 LEU 87 0.0000

LEU 87 PHE 88 0.1376

PHE 88 THR 89 -0.0001

THR 89 THR 90 -0.0413

THR 90 PRO 91 0.0001

PRO 91 LEU 92 0.0795

LEU 92 LEU 93 -0.0003

LEU 93 LEU 94 -0.0379

LEU 94 LEU 95 0.0002

LEU 95 ASP 96 0.0364

ASP 96 LEU 97 0.0003

LEU 97 ALA 98 -0.0026

ALA 98 LEU 99 -0.0003

LEU 99 LEU 100 0.0389

LEU 100 VAL 101 -0.0001

VAL 101 ASP 102 0.0235

ASP 102 ALA 103 -0.0000

ALA 103 ASP 104 0.0119

ASP 104 GLN 105 0.0003

GLN 105 GLY 106 0.0305

GLY 106 THR 107 0.0004

THR 107 ILE 108 -0.0338

ILE 108 LEU 109 -0.0001

LEU 109 ALA 110 0.0736

ALA 110 LEU 111 -0.0001

LEU 111 VAL 112 -0.0493

VAL 112 GLY 113 0.0002

GLY 113 ALA 114 0.0566

ALA 114 ASP 115 -0.0001

ASP 115 GLY 116 -0.0312

GLY 116 ILE 117 -0.0005

ILE 117 MET 118 -0.0208

MET 118 ILE 119 0.0002

ILE 119 GLY 120 0.0252

GLY 120 THR 121 -0.0002

THR 121 GLY 122 0.0145

GLY 122 LEU 123 0.0003

LEU 123 VAL 124 0.0543

VAL 124 GLY 125 0.0003

GLY 125 ALA 126 -0.0299

ALA 126 LEU 127 -0.0000

LEU 127 THR 128 0.0651

THR 128 LYS 129 0.0004

LYS 129 VAL 130 0.0042

VAL 130 TYR 131 -0.0002

TYR 131 SER 132 0.0104

SER 132 TYR 133 -0.0001

TYR 133 ARG 134 -0.0174

ARG 134 PHE 135 0.0000

PHE 135 VAL 136 0.0407

VAL 136 TRP 137 0.0003

TRP 137 TRP 138 -0.0262

TRP 138 ALA 139 -0.0002

ALA 139 ILE 140 0.0917

ILE 140 SER 141 0.0005

SER 141 THR 142 -0.0325

THR 142 ALA 143 -0.0001

ALA 143 ALA 144 0.0658

ALA 144 MET 145 0.0001

MET 145 LEU 146 0.0168

LEU 146 TYR 147 0.0001

TYR 147 ILE 148 -0.0325

ILE 148 LEU 149 0.0000

LEU 149 TYR 150 0.0902

TYR 150 VAL 151 -0.0002

VAL 151 LEU 152 0.0035

LEU 152 PHE 153 -0.0001

PHE 153 PHE 154 0.0579

PHE 154 GLY 155 0.0000

GLY 155 PHE 156 -0.0092

PHE 156 THR 157 -0.0000

THR 157 SER 158 0.0299

SER 158 LYS 159 0.0001

LYS 159 ALA 160 0.0106

ALA 160 GLU 161 0.0000

GLU 161 SER 162 -0.0080

SER 162 MET 163 0.0000

MET 163 ARG 164 0.0896

ARG 164 PRO 165 -0.0001

PRO 165 GLU 166 0.0435

GLU 166 VAL 167 -0.0002

VAL 167 ALA 168 -0.0260

ALA 168 SER 169 -0.0001

SER 169 THR 170 0.0512

THR 170 PHE 171 0.0004

PHE 171 LYS 172 -0.0194

LYS 172 VAL 173 0.0003

VAL 173 LEU 174 0.0154

LEU 174 ARG 175 -0.0003

ARG 175 ASN 176 0.0084

ASN 176 VAL 177 -0.0002

VAL 177 THR 178 -0.0414

THR 178 VAL 179 0.0002

VAL 179 VAL 180 0.0920

VAL 180 LEU 181 -0.0002

LEU 181 TRP 182 -0.0258

TRP 182 SER 183 0.0002

SER 183 ALA 184 0.1288

ALA 184 TYR 185 -0.0003

TYR 185 PRO 186 -0.0512

PRO 186 VAL 187 0.0000

VAL 187 VAL 188 0.0798

VAL 188 TRP 189 -0.0000

TRP 189 LEU 190 -0.0119

LEU 190 ILE 191 0.0003

ILE 191 GLY 192 0.0340

GLY 192 SER 193 -0.0002

SER 193 GLU 194 -0.0019

GLU 194 GLY 195 0.0003

GLY 195 ALA 196 0.0526

ALA 196 GLY 197 -0.0001

GLY 197 ILE 198 -0.0242

ILE 198 VAL 199 0.0002

VAL 199 PRO 200 0.0947

PRO 200 LEU 201 0.0001

LEU 201 ASN 202 -0.0464

ASN 202 ILE 203 0.0003

ILE 203 GLU 204 0.0292

GLU 204 THR 205 0.0003

THR 205 LEU 206 -0.0270

LEU 206 LEU 207 0.0002

LEU 207 PHE 208 -0.0026

PHE 208 MET 209 0.0002

MET 209 VAL 210 0.0636

VAL 210 LEU 211 -0.0000

LEU 211 ASP 212 -0.0303

ASP 212 VAL 213 0.0001

VAL 213 SER 214 0.1492

SER 214 ALA 215 -0.0002

ALA 215 LYS 216 -0.0201

LYS 216 VAL 217 0.0001

VAL 217 GLY 218 0.1552

GLY 218 PHE 219 0.0002

PHE 219 GLY 220 -0.0740

GLY 220 LEU 221 0.0003

LEU 221 ILE 222 0.0824

ILE 222 LEU 223 -0.0001

LEU 223 LEU 224 -0.0388

LEU 224 ARG 225 -0.0001

ARG 225 SER 226 0.0913

SER 226 ARG 227 0.0003

ARG 227 ALA 228 0.0508

ALA 228 ILE 229 -0.0002

ILE 229 PHE 230 -0.0590

PHE 230 GLY 231 0.0002

GLY 231 GLU 232 -0.0328

GLU 232 ALA 233 -0.0000

ALA 233 GLU 234 -0.0724

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** bacteriorhodopsin ***

CA strain for 2404222055381936730

--- normal mode 10 ---

Should you encounter any unexpected behaviour,
please let us know.

* bacteriorhodopsin *