Should you encounter any unexpected behaviour,
please let us know.

* 1R88_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000 *

CA strain for 240220085926145927

--- normal mode 12 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
ALA 1 ALA 2 0.0000

ALA 2 PRO 3 0.1666

PRO 3 TYR 4 0.0000

TYR 4 GLU 5 -0.2182

GLU 5 ASN 6 0.0001

ASN 6 LEU 7 0.1688

LEU 7 MET 8 0.0004

MET 8 VAL 9 -0.0605

VAL 9 PRO 10 -0.0001

PRO 10 SER 11 -0.1275

SER 11 PRO 12 0.0001

PRO 12 SER 13 0.0645

SER 13 MET 14 0.0003

MET 14 GLY 15 -0.1845

GLY 15 ARG 16 0.0002

ARG 16 ASP 17 0.0597

ASP 17 ILE 18 0.0004

ILE 18 PRO 19 0.1855

PRO 19 VAL 20 -0.0002

VAL 20 ALA 21 0.0636

ALA 21 PHE 22 -0.0000

PHE 22 LEU 23 -0.0650

LEU 23 ALA 24 0.0000

ALA 24 GLY 25 0.1021

GLY 25 GLY 26 -0.0002

GLY 26 PRO 27 -0.1071

PRO 27 HIS 28 0.0003

HIS 28 ALA 29 0.1476

ALA 29 VAL 30 0.0002

VAL 30 TYR 31 -0.1539

TYR 31 LEU 32 0.0002

LEU 32 LEU 33 0.0036

LEU 33 ASP 34 -0.0001

ASP 34 ALA 35 0.1994

ALA 35 PHE 36 -0.0002

PHE 36 ASN 37 0.0022

ASN 37 ALA 38 0.0002

ALA 38 GLY 39 0.0973

GLY 39 PRO 40 -0.0000

PRO 40 ASP 41 0.1390

ASP 41 VAL 42 -0.0001

VAL 42 SER 43 -0.0156

SER 43 ASN 44 -0.0004

ASN 44 TRP 45 -0.0500

TRP 45 VAL 46 0.0001

VAL 46 THR 47 0.1467

THR 47 ALA 48 -0.0000

ALA 48 GLY 49 -0.0986

GLY 49 ASN 50 -0.0001

ASN 50 ALA 51 -0.1291

ALA 51 MET 52 -0.0001

MET 52 ASN 53 -0.3295

ASN 53 THR 54 -0.0000

THR 54 LEU 55 0.0919

LEU 55 ALA 56 0.0002

ALA 56 GLY 57 -0.0836

GLY 57 LYS 58 0.0001

LYS 58 GLY 59 0.0093

GLY 59 ILE 60 -0.0000

ILE 60 SER 61 -0.0112

SER 61 VAL 62 0.0000

VAL 62 VAL 63 -0.1023

VAL 63 ALA 64 0.0001

ALA 64 PRO 65 -0.0617

PRO 65 ALA 66 0.0001

ALA 66 GLY 67 -0.0416

GLY 67 GLY 68 0.0000

GLY 68 ALA 69 -0.0980

ALA 69 TYR 70 0.0002

TYR 70 SER 71 -0.0304

SER 71 MET 72 0.0004

MET 72 TYR 73 -0.0319

TYR 73 THR 74 0.0002

THR 74 ASN 75 -0.0144

ASN 75 TRP 76 -0.0002

TRP 76 GLU 77 0.0787

GLU 77 GLN 78 -0.0002

GLN 78 ASP 79 -0.1201

ASP 79 GLY 80 -0.0001

GLY 80 SER 81 0.1070

SER 81 LYS 82 -0.0001

LYS 82 GLN 83 -0.2276

GLN 83 TRP 84 0.0001

TRP 84 ASP 85 -0.2988

ASP 85 THR 86 0.0004

THR 86 PHE 87 0.0354

PHE 87 LEU 88 -0.0001

LEU 88 SER 89 0.0232

SER 89 ALA 90 -0.0001

ALA 90 GLU 91 -0.3234

GLU 91 LEU 92 0.0000

LEU 92 PRO 93 -0.2011

PRO 93 ASP 94 0.0001

ASP 94 TRP 95 -0.0792

TRP 95 LEU 96 0.0000

LEU 96 ALA 97 0.1150

ALA 97 ALA 98 -0.0002

ALA 98 ASN 99 0.0407

ASN 99 ARG 100 -0.0001

ARG 100 GLY 101 0.0760

GLY 101 LEU 102 0.0001

LEU 102 ALA 103 0.0509

ALA 103 PRO 104 0.0000

PRO 104 GLY 105 -0.1029

GLY 105 GLY 106 -0.0001

GLY 106 HIS 107 0.0022

HIS 107 ALA 108 0.0002

ALA 108 ALA 109 0.0026

ALA 109 VAL 110 0.0002

VAL 110 GLY 111 0.0084

GLY 111 ALA 112 -0.0004

ALA 112 ALA 113 0.1312

ALA 113 GLN 114 0.0001

GLN 114 GLY 115 -0.0576

GLY 115 GLY 116 -0.0001

GLY 116 TYR 117 0.0223

TYR 117 GLY 118 -0.0001

GLY 118 ALA 119 -0.1335

ALA 119 MET 120 0.0003

MET 120 ALA 121 -0.1034

ALA 121 LEU 122 0.0001

LEU 122 ALA 123 -0.4723

ALA 123 ALA 124 0.0000

ALA 124 PHE 125 -0.3712

PHE 125 HIS 126 -0.0000

HIS 126 PRO 127 -0.5454

PRO 127 ASP 128 -0.0002

ASP 128 ARG 129 -0.0966

ARG 129 PHE 130 0.0001

PHE 130 GLY 131 -0.5594

GLY 131 PHE 132 0.0002

PHE 132 ALA 133 -0.0191

ALA 133 GLY 134 0.0001

GLY 134 SER 135 0.0578

SER 135 MET 136 0.0001

MET 136 SER 137 0.0948

SER 137 GLY 138 -0.0004

GLY 138 PHE 139 0.0499

PHE 139 LEU 140 0.0003

LEU 140 TYR 141 0.1486

TYR 141 PRO 142 0.0000

PRO 142 SER 143 0.0265

SER 143 ASN 144 -0.0005

ASN 144 THR 145 0.1334

THR 145 THR 146 -0.0000

THR 146 THR 147 -0.0197

THR 147 ASN 148 -0.0001

ASN 148 GLY 149 -0.0250

GLY 149 ALA 150 -0.0002

ALA 150 ILE 151 0.0339

ILE 151 ALA 152 0.0002

ALA 152 ALA 153 -0.0547

ALA 153 GLY 154 0.0001

GLY 154 MET 155 0.1584

MET 155 GLN 156 -0.0000

GLN 156 GLN 157 0.1362

GLN 157 PHE 158 0.0002

PHE 158 GLY 159 0.0577

GLY 159 GLY 160 0.0002

GLY 160 VAL 161 0.0265

VAL 161 ASP 162 0.0001

ASP 162 THR 163 -0.0110

THR 163 ASN 164 0.0001

ASN 164 GLY 165 -0.1408

GLY 165 MET 166 0.0001

MET 166 TRP 167 -0.0751

TRP 167 GLY 168 0.0002

GLY 168 ALA 169 -0.0905

ALA 169 PRO 170 0.0000

PRO 170 GLN 171 0.0622

GLN 171 LEU 172 0.0003

LEU 172 GLY 173 -0.0304

GLY 173 ARG 174 0.0001

ARG 174 TRP 175 -0.0346

TRP 175 LYS 176 -0.0001

LYS 176 TRP 177 -0.0008

TRP 177 HIS 178 -0.0001

HIS 178 ASP 179 -0.2230

ASP 179 PRO 180 -0.0000

PRO 180 TRP 181 0.0426

TRP 181 VAL 182 0.0001

VAL 182 HIS 183 0.0879

HIS 183 ALA 184 0.0001

ALA 184 SER 185 0.0710

SER 185 LEU 186 0.0000

LEU 186 LEU 187 0.0874

LEU 187 ALA 188 -0.0000

ALA 188 GLN 189 -0.0389

GLN 189 ASN 190 0.0001

ASN 190 ASN 191 -0.1027

ASN 191 THR 192 -0.0000

THR 192 ARG 193 0.2751

ARG 193 VAL 194 0.0001

VAL 194 TRP 195 0.1803

TRP 195 VAL 196 0.0001

VAL 196 TRP 197 -0.0169

TRP 197 SER 198 -0.0003

SER 198 PRO 199 -0.0981

PRO 199 THR 200 -0.0002

THR 200 ASN 201 0.0037

ASN 201 PRO 202 0.0002

PRO 202 GLY 203 0.0508

GLY 203 ALA 204 0.0004

ALA 204 SER 205 -0.2085

SER 205 ASP 206 -0.0002

ASP 206 PRO 207 0.0830

PRO 207 ALA 208 -0.0003

ALA 208 ALA 209 0.0625

ALA 209 MET 210 0.0003

MET 210 ILE 211 0.2604

ILE 211 GLY 212 0.0003

GLY 212 GLN 213 0.0333

GLN 213 ALA 214 -0.0003

ALA 214 ALA 215 -0.0374

ALA 215 GLU 216 -0.0001

GLU 216 ALA 217 0.0455

ALA 217 MET 218 -0.0001

MET 218 GLY 219 -0.0646

GLY 219 ASN 220 -0.0003

ASN 220 SER 221 0.1825

SER 221 ARG 222 0.0003

ARG 222 MET 223 -0.0964

MET 223 PHE 224 0.0003

PHE 224 TYR 225 0.0237

TYR 225 ASN 226 0.0001

ASN 226 GLN 227 -0.1406

GLN 227 TYR 228 -0.0000

TYR 228 ARG 229 -0.1203

ARG 229 SER 230 -0.0002

SER 230 VAL 231 -0.0842

VAL 231 GLY 232 -0.0002

GLY 232 GLY 233 0.0257

GLY 233 HIS 234 -0.0001

HIS 234 ASN 235 -0.0750

ASN 235 GLY 236 0.0002

GLY 236 HIS 237 0.3125

HIS 237 PHE 238 0.0000

PHE 238 ASP 239 0.0702

ASP 239 PHE 240 0.0000

PHE 240 PRO 241 -0.1391

PRO 241 ALA 242 -0.0001

ALA 242 SER 243 0.1360

SER 243 GLY 244 0.0001

GLY 244 ASP 245 0.3389

ASP 245 ASN 246 -0.0002

ASN 246 GLY 247 0.5705

GLY 247 TRP 248 -0.0001

TRP 248 GLY 249 0.0782

GLY 249 SER 250 0.0000

SER 250 TRP 251 0.0678

TRP 251 ALA 252 -0.0001

ALA 252 PRO 253 0.0076

PRO 253 GLN 254 0.0003

GLN 254 LEU 255 0.1537

LEU 255 GLY 256 0.0000

GLY 256 ALA 257 0.0916

ALA 257 MET 258 0.0002

MET 258 SER 259 0.0282

SER 259 GLY 260 0.0000

GLY 260 ASP 261 0.1525

ASP 261 ILE 262 0.0004

ILE 262 VAL 263 -0.0209

VAL 263 GLY 264 0.0000

GLY 264 ALA 265 -0.0025

ALA 265 ILE 266 0.0000

ILE 266 ARG 267 -0.1003

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** 1R88_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000 ***

CA strain for 240220085926145927

--- normal mode 12 ---

Should you encounter any unexpected behaviour,
please let us know.

* 1R88_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000 *