CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  EXP_1P5V_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000  ***

CA strain for 24021912381935461

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
VAL 1GLU 2 -0.0054
GLU 2PRO 3 0.1691
PRO 3ALA 4 -0.1484
ALA 4ARG 5 -0.2708
ARG 5ILE 6 -0.1680
ILE 6THR 7 0.0667
THR 7LEU 8 0.1909
LEU 8THR 9 0.0732
THR 9TYR 10 0.2977
TYR 10LYS 11 0.0585
LYS 11GLU 12 0.1573
GLU 12GLY 13 -0.0169
GLY 13ALA 14 0.0760
ALA 14PRO 15 0.0590
PRO 15ILE 16 -0.0167
ILE 16THR 17 0.1057
THR 17ILE 18 0.0273
ILE 18MET 19 -0.0112
MET 19ASP 20 -0.0249
ASP 20ASN 21 -0.0185
ASN 21GLY 22 0.0359
GLY 22ASN 23 -0.0018
ASN 23ILE 24 0.0318
ILE 24ASP 25 -0.0251
ASP 25THR 26 -0.1122
THR 26GLU 27 -0.0139
GLU 27LEU 28 -0.0919
LEU 28LEU 29 0.1622
LEU 29VAL 30 -0.0637
VAL 30GLY 31 0.1417
GLY 31THR 32 0.1587
THR 32LEU 33 0.0709
LEU 33THR 34 0.0456
THR 34LEU 35 0.0799
LEU 35GLY 36 0.0785
GLY 36GLY 37 0.1446
GLY 37TYR 38 -0.0031
TYR 38LYS 39 0.0774
LYS 39THR 40 0.0148
THR 40GLY 41 0.0029
GLY 41THR 42 0.0406
THR 42THR 43 -0.0963
THR 43SER 44 -0.0476
SER 44THR 45 0.0140
THR 45SER 46 -0.1696
SER 46VAL 47 -0.0130
VAL 47ASN 48 0.0318
ASN 48PHE 49 0.0092
PHE 49THR 50 -0.0031
THR 50ASP 51 0.0581
ASP 51ALA 52 -0.0214
ALA 52ALA 53 -0.0038
ALA 53GLY 54 0.0375
GLY 54ASP 55 -0.0179
ASP 55PRO 56 0.0314
PRO 56MET 57 0.0523
MET 57TYR 58 -0.0408
TYR 58LEU 59 -0.0130
LEU 59THR 60 0.0524
THR 60PHE 61 -0.0006
PHE 61THR 62 -0.0288
THR 62SER 63 0.0544
SER 63GLN 64 0.0042
GLN 64ASP 65 0.0394
ASP 65GLY 66 -0.0391
GLY 66ASN 67 -0.0065
ASN 67ASN 68 0.0259
ASN 68HIS 69 -0.0069
HIS 69GLN 70 0.0099
GLN 70PHE 71 0.0024
PHE 71THR 72 -0.0735
THR 72THR 73 -0.0080
THR 73LYS 74 -0.0445
LYS 74VAL 75 -0.0838
VAL 75ILE 76 0.0471
ILE 76GLY 77 -0.0450
GLY 77LYS 78 -0.0048
LYS 78ASP 79 -0.0583
ASP 79SER 80 0.0125
SER 80ARG 81 -0.0114
ARG 81ASP 82 0.0042
ASP 82PHE 83 0.0209
PHE 83ASP 84 0.0125
ASP 84ILE 85 -0.0625
ILE 85SER 86 0.1387
SER 86PRO 87 0.0473
PRO 87LYS 88 0.0268
LYS 88VAL 89 -0.0497
VAL 89ASN 90 0.0437
ASN 90GLY 91 0.1096
GLY 91GLU 92 0.0231
GLU 92ASN 93 0.0963
ASN 93LEU 94 -0.1312
LEU 94VAL 95 -0.0640
VAL 95GLY 96 -0.0009
GLY 96ASP 97 0.0244
ASP 97ASP 98 -0.0040
ASP 98VAL 99 0.0385
VAL 99VAL 100 -0.0304
VAL 100LEU 101 0.0143
LEU 101ALA 102 0.0118
ALA 102THR 103 -0.0002
THR 103GLY 104 0.0092
GLY 104SER 105 0.0437
SER 105GLN 106 0.0266
GLN 106ASP 107 0.0379
ASP 107PHE 108 0.0142
PHE 108PHE 109 0.0365
PHE 109VAL 110 -0.0322
VAL 110ARG 111 0.0467
ARG 111SER 112 -0.0358
SER 112ILE 113 0.0855
ILE 113GLY 114 -0.1743
GLY 114SER 115 0.0287
SER 115LYS 116 -0.1701
LYS 116GLY 117 0.0832
GLY 117GLY 118 -0.0878
GLY 118LYS 119 -0.0110
LYS 119LEU 120 -0.0108
LEU 120ALA 121 -0.0352
ALA 121ALA 122 -0.0059
ALA 122GLY 123 0.0445
GLY 123LYS 124 0.1359
LYS 124TYR 125 -0.0201
TYR 125THR 126 0.1473
THR 126ASP 127 0.2412
ASP 127ALA 128 0.0924
ALA 128VAL 129 -0.0348
VAL 129THR 130 0.1271
THR 130VAL 131 0.0171
VAL 131THR 132 0.0670
THR 132VAL 133 0.0256
VAL 133SER 134 0.0423
SER 134ASN 135 0.0312
ASN 135GLN 136 -0.2768

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.