CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  EXP_1P5V_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000  ***

CA strain for 24021912381935461

---  normal mode 16  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
VAL 1GLU 2 -0.0527
GLU 2PRO 3 -0.2020
PRO 3ALA 4 -0.2104
ALA 4ARG 5 0.1868
ARG 5ILE 6 0.1617
ILE 6THR 7 0.0125
THR 7LEU 8 0.1449
LEU 8THR 9 0.0536
THR 9TYR 10 0.0630
TYR 10LYS 11 0.0375
LYS 11GLU 12 0.0814
GLU 12GLY 13 -0.0372
GLY 13ALA 14 0.0995
ALA 14PRO 15 -0.1975
PRO 15ILE 16 0.0116
ILE 16THR 17 0.3104
THR 17ILE 18 0.2375
ILE 18MET 19 0.1308
MET 19ASP 20 -0.1185
ASP 20ASN 21 -0.0148
ASN 21GLY 22 0.1257
GLY 22ASN 23 0.0780
ASN 23ILE 24 0.0728
ILE 24ASP 25 0.0725
ASP 25THR 26 -0.0983
THR 26GLU 27 -0.0206
GLU 27LEU 28 -0.0670
LEU 28LEU 29 0.0496
LEU 29VAL 30 0.0616
VAL 30GLY 31 0.0364
GLY 31THR 32 -0.0845
THR 32LEU 33 0.0749
LEU 33THR 34 -0.1048
THR 34LEU 35 -0.0716
LEU 35GLY 36 -0.0095
GLY 36GLY 37 -0.0002
GLY 37TYR 38 -0.1193
TYR 38LYS 39 -0.0222
LYS 39THR 40 0.0044
THR 40GLY 41 0.0991
GLY 41THR 42 0.0862
THR 42THR 43 -0.0977
THR 43SER 44 0.0159
SER 44THR 45 0.0770
THR 45SER 46 -0.1544
SER 46VAL 47 0.0252
VAL 47ASN 48 0.0178
ASN 48PHE 49 0.0007
PHE 49THR 50 0.0370
THR 50ASP 51 -0.0587
ASP 51ALA 52 0.0272
ALA 52ALA 53 -0.0672
ALA 53GLY 54 -0.0865
GLY 54ASP 55 -0.0313
ASP 55PRO 56 -0.0499
PRO 56MET 57 -0.0395
MET 57TYR 58 -0.0458
TYR 58LEU 59 0.0239
LEU 59THR 60 -0.1575
THR 60PHE 61 -0.0090
PHE 61THR 62 -0.0325
THR 62SER 63 -0.0547
SER 63GLN 64 -0.0191
GLN 64ASP 65 -0.0370
ASP 65GLY 66 0.1745
GLY 66ASN 67 0.0054
ASN 67ASN 68 -0.0592
ASN 68HIS 69 0.0113
HIS 69GLN 70 -0.0334
GLN 70PHE 71 0.0517
PHE 71THR 72 0.0206
THR 72THR 73 -0.1259
THR 73LYS 74 -0.0585
LYS 74VAL 75 -0.1250
VAL 75ILE 76 -0.1314
ILE 76GLY 77 0.0149
GLY 77LYS 78 0.1117
LYS 78ASP 79 0.1397
ASP 79SER 80 -0.1174
SER 80ARG 81 0.2114
ARG 81ASP 82 -0.0485
ASP 82PHE 83 -0.0624
PHE 83ASP 84 -0.3083
ASP 84ILE 85 -0.0090
ILE 85SER 86 -0.3877
SER 86PRO 87 -0.1311
PRO 87LYS 88 -0.0184
LYS 88VAL 89 -0.0302
VAL 89ASN 90 -0.0200
ASN 90GLY 91 -0.1094
GLY 91GLU 92 -0.0389
GLU 92ASN 93 -0.1435
ASN 93LEU 94 0.1198
LEU 94VAL 95 -0.0275
VAL 95GLY 96 -0.0382
GLY 96ASP 97 -0.1601
ASP 97ASP 98 -0.2570
ASP 98VAL 99 -0.1826
VAL 99VAL 100 0.1192
VAL 100LEU 101 0.0359
LEU 101ALA 102 0.0515
ALA 102THR 103 0.1327
THR 103GLY 104 -0.0073
GLY 104SER 105 -0.2162
SER 105GLN 106 0.0956
GLN 106ASP 107 -0.1922
ASP 107PHE 108 -0.1351
PHE 108PHE 109 -0.1075
PHE 109VAL 110 0.0333
VAL 110ARG 111 -0.0756
ARG 111SER 112 -0.0559
SER 112ILE 113 -0.0078
ILE 113GLY 114 -0.1986
GLY 114SER 115 0.0220
SER 115LYS 116 -0.2559
LYS 116GLY 117 0.1124
GLY 117GLY 118 -0.2686
GLY 118LYS 119 -0.0079
LYS 119LEU 120 -0.0095
LEU 120ALA 121 0.0494
ALA 121ALA 122 -0.0082
ALA 122GLY 123 0.0825
GLY 123LYS 124 0.0398
LYS 124TYR 125 0.0627
TYR 125THR 126 0.0109
THR 126ASP 127 -0.0814
ASP 127ALA 128 -0.0412
ALA 128VAL 129 0.0190
VAL 129THR 130 -0.0002
THR 130VAL 131 -0.0227
VAL 131THR 132 0.0303
THR 132VAL 133 0.0808
VAL 133SER 134 -0.0144
SER 134ASN 135 0.1536
ASN 135GLN 136 -0.2106

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.