Should you encounter any unexpected behaviour,
please let us know.

* LIPID BINDING PROTEIN 11-OCT-10 3P6D *

CA strain for 2402091305182111772

--- normal mode 11 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
GLN -7 GLN -6 -0.0052

GLN -6 MET -5 -0.0566

MET -5 GLY -4 0.2607

GLY -4 ARG -3 0.1200

ARG -3 GLY -2 0.0459

GLY -2 SER -1 0.0923

SER -1 MET 0 0.0322

MET 0 MET 0 -0.0033

MET 0 CYS 1 0.0070

CYS 1 CYS 1 -0.0018

CYS 1 ASP 2 -0.0060

ASP 2 ALA 3 0.0966

ALA 3 PHE 4 -0.0114

PHE 4 VAL 5 -0.0053

VAL 5 GLY 6 0.0044

GLY 6 THR 7 0.0053

THR 7 TRP 8 -0.0013

TRP 8 LYS 9 0.0062

LYS 9 LEU 10 0.0008

LEU 10 VAL 11 -0.0020

VAL 11 SER 12 0.0000

SER 12 SER 13 0.0055

SER 13 GLU 14 -0.0024

GLU 14 GLU 14 -0.0061

GLU 14 ASN 15 0.0018

ASN 15 ASN 15 -0.0245

ASN 15 PHE 16 -0.0037

PHE 16 ASP 17 0.0073

ASP 17 ASP 18 -0.0021

ASP 18 TYR 19 -0.0004

TYR 19 MET 20 0.0007

MET 20 LYS 21 -0.0001

LYS 21 GLU 22 -0.0019

GLU 22 VAL 23 -0.0032

VAL 23 GLY 24 0.0029

GLY 24 VAL 25 0.0010

VAL 25 GLY 26 -0.0024

GLY 26 PHE 27 -0.0041

PHE 27 ALA 28 0.0006

ALA 28 THR 29 -0.0050

THR 29 ARG 30 -0.0003

ARG 30 LYS 31 -0.0010

LYS 31 VAL 32 -0.0036

VAL 32 VAL 32 0.0105

VAL 32 ALA 33 0.0024

ALA 33 GLY 34 -0.0028

GLY 34 MET 35 -0.0054

MET 35 ALA 36 -0.0009

ALA 36 LYS 37 0.0065

LYS 37 PRO 38 -0.0032

PRO 38 ASN 39 -0.0009

ASN 39 MET 40 0.0015

MET 40 ILE 41 -0.0014

ILE 41 ILE 42 -0.0028

ILE 42 SER 43 -0.0010

SER 43 VAL 44 -0.0249

VAL 44 ASN 45 0.0383

ASN 45 GLY 46 -0.0695

GLY 46 ASP 47 -0.1407

ASP 47 VAL 48 0.0066

VAL 48 ILE 49 0.0110

ILE 49 THR 50 -0.0036

THR 50 ILE 51 -0.0163

ILE 51 LYS 52 0.0008

LYS 52 SER 53 -0.0084

SER 53 GLU 54 0.0023

GLU 54 SER 55 -0.0036

SER 55 SER 55 -0.0002

SER 55 THR 56 -0.0021

THR 56 THR 56 -0.0000

THR 56 PHE 57 0.0008

PHE 57 PHE 57 0.0009

PHE 57 LYS 58 -0.0003

LYS 58 LYS 58 0.0018

LYS 58 ASN 59 -0.0063

ASN 59 THR 60 -0.0004

THR 60 GLU 61 -0.0225

GLU 61 ILE 62 0.0009

ILE 62 SER 63 -0.0282

SER 63 PHE 64 0.0177

PHE 64 ILE 65 0.0065

ILE 65 LEU 66 0.0053

LEU 66 GLY 67 -0.0040

GLY 67 GLN 68 -0.0036

GLN 68 GLU 69 -0.0106

GLU 69 PHE 70 0.0021

PHE 70 ASP 71 -0.0065

ASP 71 GLU 72 0.0051

GLU 72 VAL 73 -0.0004

VAL 73 VAL 73 -0.0001

VAL 73 THR 74 -0.0005

THR 74 ALA 75 0.0041

ALA 75 ASP 76 -0.0047

ASP 76 ASP 77 -0.0001

ASP 77 ARG 78 0.0052

ARG 78 LYS 79 -0.0023

LYS 79 VAL 80 0.0006

VAL 80 LYS 81 0.0015

LYS 81 SER 82 -0.0006

SER 82 THR 83 0.0028

THR 83 ILE 84 -0.0002

ILE 84 THR 85 0.0005

THR 85 LEU 86 -0.0067

LEU 86 LEU 86 -0.0002

LEU 86 ASP 87 -0.0006

ASP 87 ASP 87 -0.0021

ASP 87 GLY 88 0.0042

GLY 88 GLY 88 0.0020

GLY 88 GLY 89 -0.0039

GLY 89 GLY 89 -0.0011

GLY 89 VAL 90 0.0190

VAL 90 LEU 91 -0.0008

LEU 91 VAL 92 0.0027

VAL 92 HIS 93 0.0075

HIS 93 VAL 94 0.0020

VAL 94 GLN 95 0.0045

GLN 95 LYS 96 0.0005

LYS 96 TRP 97 0.0011

TRP 97 ASP 98 -0.0044

ASP 98 ASP 98 -0.0038

ASP 98 GLY 99 -0.0001

GLY 99 LYS 100 0.0007

LYS 100 SER 101 0.0030

SER 101 THR 102 0.0023

THR 102 THR 103 0.0082

THR 103 ILE 104 0.0008

ILE 104 LYS 105 0.0060

LYS 105 ARG 106 0.0040

ARG 106 LYS 107 -0.0043

LYS 107 ARG 108 -0.0008

ARG 108 GLU 109 0.0112

GLU 109 ASP 110 -0.0030

ASP 110 ASP 111 -0.0037

ASP 111 LYS 112 0.0009

LYS 112 LEU 113 -0.0016

LEU 113 LEU 113 -0.0559

LEU 113 VAL 114 0.0076

VAL 114 VAL 115 -0.0004

VAL 115 GLU 116 0.0011

GLU 116 GLU 116 -0.0025

GLU 116 CYS 117 0.0045

CYS 117 VAL 118 0.0006

VAL 118 MET 119 0.0048

MET 119 MET 119 0.0007

MET 119 LYS 120 0.0005

LYS 120 LYS 120 0.0000

LYS 120 GLY 121 0.0001

GLY 121 GLY 121 -0.0046

GLY 121 VAL 122 -0.0007

VAL 122 THR 123 0.0032

THR 123 SER 124 -0.0014

SER 124 THR 125 0.0025

THR 125 ARG 126 0.0001

ARG 126 VAL 127 0.0033

VAL 127 TYR 128 0.0023

TYR 128 GLU 129 -0.0021

GLU 129 GLU 129 -0.0015

GLU 129 ARG 130 0.0051

ARG 130 ALA 131 -0.0002

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** LIPID BINDING PROTEIN 11-OCT-10 3P6D ***

CA strain for 2402091305182111772

--- normal mode 11 ---

Should you encounter any unexpected behaviour,
please let us know.

* LIPID BINDING PROTEIN 11-OCT-10 3P6D *