Should you encounter any unexpected behaviour,
please let us know.

* LIPID BINDING PROTEIN 11-OCT-10 3P6D *

CA strain for 2402091305182111772

--- normal mode 10 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
GLN -7 GLN -6 0.0014

GLN -6 MET -5 0.0129

MET -5 GLY -4 -0.0239

GLY -4 ARG -3 0.0279

ARG -3 GLY -2 0.0669

GLY -2 SER -1 0.1227

SER -1 MET 0 0.0347

MET 0 MET 0 -0.0097

MET 0 CYS 1 0.0064

CYS 1 CYS 1 0.0043

CYS 1 ASP 2 -0.0089

ASP 2 ALA 3 0.0575

ALA 3 PHE 4 -0.0078

PHE 4 VAL 5 -0.0051

VAL 5 GLY 6 0.0001

GLY 6 THR 7 0.0032

THR 7 TRP 8 -0.0015

TRP 8 LYS 9 0.0052

LYS 9 LEU 10 -0.0004

LEU 10 VAL 11 -0.0021

VAL 11 SER 12 -0.0008

SER 12 SER 13 0.0046

SER 13 GLU 14 -0.0032

GLU 14 GLU 14 0.0035

GLU 14 ASN 15 0.0005

ASN 15 ASN 15 -0.0340

ASN 15 PHE 16 -0.0035

PHE 16 ASP 17 0.0069

ASP 17 ASP 18 -0.0027

ASP 18 TYR 19 -0.0004

TYR 19 MET 20 0.0014

MET 20 LYS 21 0.0000

LYS 21 GLU 22 -0.0015

GLU 22 VAL 23 -0.0039

VAL 23 GLY 24 0.0032

GLY 24 VAL 25 0.0016

VAL 25 GLY 26 -0.0024

GLY 26 PHE 27 -0.0043

PHE 27 ALA 28 0.0007

ALA 28 THR 29 -0.0063

THR 29 ARG 30 -0.0004

ARG 30 LYS 31 -0.0000

LYS 31 VAL 32 -0.0052

VAL 32 VAL 32 0.0067

VAL 32 ALA 33 0.0033

ALA 33 GLY 34 -0.0036

GLY 34 MET 35 -0.0051

MET 35 ALA 36 -0.0016

ALA 36 LYS 37 0.0064

LYS 37 PRO 38 -0.0051

PRO 38 ASN 39 -0.0021

ASN 39 MET 40 0.0009

MET 40 ILE 41 -0.0045

ILE 41 ILE 42 -0.0047

ILE 42 SER 43 -0.0064

SER 43 VAL 44 -0.0394

VAL 44 ASN 45 0.0570

ASN 45 GLY 46 -0.1030

GLY 46 ASP 47 -0.1842

ASP 47 VAL 48 0.0084

VAL 48 ILE 49 0.0111

ILE 49 THR 50 -0.0066

THR 50 ILE 51 -0.0235

ILE 51 LYS 52 0.0002

LYS 52 SER 53 -0.0132

SER 53 GLU 54 0.0028

GLU 54 SER 55 -0.0057

SER 55 SER 55 -0.0002

SER 55 THR 56 -0.0033

THR 56 THR 56 -0.0002

THR 56 PHE 57 0.0011

PHE 57 PHE 57 -0.0002

PHE 57 LYS 58 -0.0011

LYS 58 LYS 58 -0.0041

LYS 58 ASN 59 -0.0076

ASN 59 THR 60 -0.0011

THR 60 GLU 61 -0.0299

GLU 61 ILE 62 0.0002

ILE 62 SER 63 -0.0368

SER 63 PHE 64 0.0201

PHE 64 ILE 65 0.0081

ILE 65 LEU 66 0.0059

LEU 66 GLY 67 -0.0033

GLY 67 GLN 68 -0.0044

GLN 68 GLU 69 -0.0118

GLU 69 PHE 70 0.0026

PHE 70 ASP 71 -0.0080

ASP 71 GLU 72 0.0065

GLU 72 VAL 73 -0.0012

VAL 73 VAL 73 -0.0001

VAL 73 THR 74 -0.0004

THR 74 ALA 75 0.0058

ALA 75 ASP 76 -0.0059

ASP 76 ASP 77 0.0000

ASP 77 ARG 78 0.0068

ARG 78 LYS 79 -0.0028

LYS 79 VAL 80 0.0007

VAL 80 LYS 81 0.0023

LYS 81 SER 82 -0.0002

SER 82 THR 83 0.0030

THR 83 ILE 84 -0.0002

ILE 84 THR 85 0.0001

THR 85 LEU 86 -0.0080

LEU 86 LEU 86 -0.0005

LEU 86 ASP 87 -0.0013

ASP 87 ASP 87 -0.0009

ASP 87 GLY 88 0.0050

GLY 88 GLY 88 0.0006

GLY 88 GLY 89 -0.0046

GLY 89 GLY 89 0.0009

GLY 89 VAL 90 0.0232

VAL 90 LEU 91 -0.0013

LEU 91 VAL 92 0.0024

VAL 92 HIS 93 0.0096

HIS 93 VAL 94 0.0027

VAL 94 GLN 95 0.0056

GLN 95 LYS 96 0.0005

LYS 96 TRP 97 0.0010

TRP 97 ASP 98 -0.0055

ASP 98 ASP 98 -0.0058

ASP 98 GLY 99 -0.0006

GLY 99 LYS 100 0.0005

LYS 100 SER 101 0.0035

SER 101 THR 102 0.0027

THR 102 THR 103 0.0094

THR 103 ILE 104 0.0013

ILE 104 LYS 105 0.0066

LYS 105 ARG 106 0.0023

ARG 106 LYS 107 -0.0047

LYS 107 ARG 108 -0.0024

ARG 108 GLU 109 0.0102

GLU 109 ASP 110 -0.0034

ASP 110 ASP 111 -0.0036

ASP 111 LYS 112 0.0009

LYS 112 LEU 113 -0.0015

LEU 113 LEU 113 0.0000

LEU 113 VAL 114 0.0062

VAL 114 VAL 115 -0.0010

VAL 115 GLU 116 0.0009

GLU 116 GLU 116 0.0148

GLU 116 CYS 117 0.0045

CYS 117 VAL 118 0.0006

VAL 118 MET 119 0.0048

MET 119 MET 119 0.0005

MET 119 LYS 120 0.0004

LYS 120 LYS 120 0.0012

LYS 120 GLY 121 -0.0002

GLY 121 GLY 121 -0.0025

GLY 121 VAL 122 -0.0007

VAL 122 THR 123 0.0025

THR 123 SER 124 -0.0012

SER 124 THR 125 0.0018

THR 125 ARG 126 -0.0002

ARG 126 VAL 127 0.0028

VAL 127 TYR 128 0.0012

TYR 128 GLU 129 -0.0025

GLU 129 GLU 129 -0.0028

GLU 129 ARG 130 0.0046

ARG 130 ALA 131 0.0003

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** LIPID BINDING PROTEIN 11-OCT-10 3P6D ***

CA strain for 2402091305182111772

--- normal mode 10 ---

Should you encounter any unexpected behaviour,
please let us know.

* LIPID BINDING PROTEIN 11-OCT-10 3P6D *