CNRS Nantes University US2B US2B
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***  HIV protease  ***

CA strain for 2402051700431573247

---  normal mode 10  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.1193
GLN 2ILE 3 -0.1341
ILE 3THR 4 0.1453
THR 4LEU 5 0.1043
LEU 5TRP 6 -0.1155
TRP 6GLN 7 0.0362
GLN 7ARG 8 -0.0961
ARG 8PRO 9 -0.0797
PRO 9LEU 10 -0.0034
LEU 10VAL 11 0.1037
VAL 11THR 12 0.1268
THR 12ILE 13 0.0187
ILE 13LYS 14 0.0349
LYS 14ILE 15 0.0333
ILE 15GLY 16 0.0084
GLY 16GLY 17 0.0462
GLY 17GLN 18 0.0068
GLN 18LEU 19 0.0424
LEU 19LYS 20 0.0031
LYS 20GLU 21 0.0840
GLU 21ALA 22 -0.0036
ALA 22LEU 23 -0.0024
LEU 23LEU 24 0.0270
LEU 24ASP 25 0.0244
ASP 25THR 26 0.0602
THR 26GLY 27 -0.0922
GLY 27ALA 28 -0.0034
ALA 28ASP 29 0.0248
ASP 29ASP 30 -0.0330
ASP 30THR 31 0.0193
THR 31VAL 32 0.0025
VAL 32LEU 33 -0.0157
LEU 33GLU 34 0.0184
GLU 34GLU 35 -0.0536
GLU 35MET 36 0.0365
MET 36SER 37 -0.0181
SER 37LEU 38 -0.0167
LEU 38PRO 39 0.0075
PRO 39GLY 40 0.0119
GLY 40ARG 41 0.0079
ARG 41TRP 42 -0.0212
TRP 42LYS 43 -0.0187
LYS 43PRO 44 0.0487
PRO 44LYS 45 -0.0546
LYS 45MET 46 0.0038
MET 46ILE 47 -0.0130
ILE 47GLY 48 -0.2811
GLY 48GLY 49 -0.0803
GLY 49ILE 50 -0.0217
ILE 50GLY 51 0.0114
GLY 51GLY 52 -0.0183
GLY 52PHE 53 -0.0490
PHE 53ILE 54 0.0497
ILE 54LYS 55 0.2763
LYS 55VAL 56 0.0118
VAL 56ARG 57 0.0429
ARG 57GLN 58 0.0282
GLN 58TYR 59 0.0284
TYR 59ASP 60 -0.0063
ASP 60GLN 61 0.0587
GLN 61ILE 62 -0.0164
ILE 62LEU 63 0.0951
LEU 63ILE 64 0.0162
ILE 64GLU 65 0.0217
GLU 65ILE 66 0.0110
ILE 66CYS 67 0.0136
CYS 67GLY 68 0.0909
GLY 68HIS 69 -0.0338
HIS 69LYS 70 0.1188
LYS 70ALA 71 -0.0094
ALA 71ILE 72 0.0633
ILE 72GLY 73 -0.0009
GLY 73THR 74 -0.0055
THR 74VAL 75 0.0147
VAL 75LEU 76 -0.0069
LEU 76VAL 77 -0.0076
VAL 77GLY 78 0.0285
GLY 78PRO 79 -0.0030
PRO 79THR 80 -0.0902
THR 80PRO 81 0.0174
PRO 81VAL 82 -0.0526
VAL 82ASN 83 -0.0265
ASN 83ILE 84 0.0398
ILE 84ILE 85 0.0075
ILE 85GLY 86 0.0136
GLY 86ARG 87 0.0233
ARG 87ASN 88 -0.0196
ASN 88LEU 89 -0.0313
LEU 89LEU 90 0.0228
LEU 90THR 91 0.0105
THR 91GLN 92 -0.0100
GLN 92ILE 93 0.0151
ILE 93GLY 94 -0.0086
GLY 94CYS 95 0.0031
CYS 95THR 96 0.0500
THR 96LEU 97 -0.0133
LEU 97ASN 98 -0.0560
ASN 98PHE 99 0.0052

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.