This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
THR 1
THR 2
0.4287
THR 2
CYS 3
0.4060
CYS 3
CYS 4
-0.2988
CYS 4
PRO 5
0.1348
PRO 5
SER 6
0.0635
SER 6
ILE 7
0.1148
ILE 7
VAL 8
-0.1445
VAL 8
ALA 9
0.2139
ALA 9
ARG 10
0.0414
ARG 10
SER 11
-0.1360
SER 11
ASN 12
0.2022
ASN 12
PHE 13
0.1035
PHE 13
ASN 14
0.0003
ASN 14
VAL 15
0.0858
VAL 15
CYS 16
0.2197
CYS 16
ARG 17
-0.1197
ARG 17
LEU 18
0.1338
LEU 18
PRO 19
0.0727
PRO 19
GLY 20
0.1742
GLY 20
THR 21
-0.1737
THR 21
PRO 22
0.1614
PRO 22
GLU 23
0.3233
GLU 23
ALA 24
-0.1213
ALA 24
ILE 25
0.1564
ILE 25
CYS 26
0.0340
CYS 26
ALA 27
-0.0801
ALA 27
THR 28
0.0919
THR 28
TYR 29
0.0573
TYR 29
THR 30
-0.0735
THR 30
GLY 31
-0.1912
GLY 31
CYS 32
0.1709
CYS 32
ILE 33
0.0267
ILE 33
ILE 34
0.0693
ILE 34
ILE 35
0.3089
ILE 35
PRO 36
-0.0931
PRO 36
GLY 37
-0.0058
GLY 37
ALA 38
0.0289
ALA 38
THR 39
-0.0499
THR 39
CYS 40
-0.0978
CYS 40
PRO 41
0.2465
PRO 41
GLY 42
-0.1058
GLY 42
ASP 43
-0.1567
ASP 43
TYR 44
0.0298
TYR 44
ALA 45
0.0554
ALA 45
ASN 46
0.0052
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.