CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  VIRAL PROTEIN/RNA BINDING PROTEIN 31-JUL-12 4B4N  ***

B-factor analysis for ID 22101122370966482

Overall B-factor prediction

Correlation= 0.345 for 152 C-alpha atoms.

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

  ATOM TYP  RES  RESID   B-PREDICT    B-SCALED      B-OBS
B-SCALEDB-OBS
     2 CA   PRO      1      0.0202     24.4895     21.8900
     9 CA   ILE      2      0.0246     24.8840     19.7600
    17 CA   VAL      3      0.0566     27.7934     22.5400
    24 CA   GLN      4      0.1340     34.8210     26.4400
    33 CA   ASN      5      0.1982     40.6520     23.1800
    41 CA   LEU      6      0.5317     70.9315     40.5100
    49 CA   GLN      7      0.5322     70.9813     36.7500
    58 CA   GLY      8      0.3352     53.0898     29.3700
    62 CA   GLN      9      0.2087     41.6072     22.5700
    71 CA   MET     10      0.0858     30.4467     25.6300
    79 CA   VAL     11      0.0620     28.2839     23.4300
    86 CA   HIS     12      0.0272     25.1214     21.8100
    96 CA   GLN     13      0.0457     26.7985     28.1000
   105 CA   ALA     14      0.0462     26.8471     32.6400
   110 CA   ILE     15      0.0291     25.2970     30.2700
   118 CA   SER     16      0.0655     28.6033     33.9700
   124 CA   PRO     17      0.0979     31.5409     39.0400
   131 CA   ARG     18      0.0852     30.3871     33.4200
   142 CA   THR     19      0.0342     25.7605     29.7000
   149 CA   LEU     20      0.0242     24.8531     34.1600
   157 CA   ASN     21      0.0449     26.7278     32.5000
   165 CA   ALA     22      0.0322     25.5750     30.8700
   170 CA   TRP     23      0.0160     24.1044     26.7400
   184 CA   VAL     24      0.0235     24.7882     28.1300
   191 CA   LYS     25      0.0374     26.0462     31.7000
   200 CA   VAL     26      0.0214     24.5964     32.5900
   207 CA   VAL     27      0.0175     24.2393     31.2500
   214 CA   GLU     28      0.0433     26.5871     38.8000
   223 CA   GLU     29      0.0597     28.0710     43.9800
   232 CA   LYS     30      0.0346     25.7914     47.9800
   241 CA   ALA     31      0.0261     25.0254     48.1700
   246 CA   PHE     32      0.0182     24.3094     41.6300
   257 CA   SER     33      0.0306     25.4274     42.0100
   263 CA   PRO     34      0.0455     26.7860     44.6700
   270 CA   GLU     35      0.0377     26.0768     38.6900
   279 CA   VAL     36      0.0174     24.2326     28.6200
   286 CA   ILE     37      0.0187     24.3539     26.2500
   294 CA   PRO     38      0.0415     26.4215     25.7600
   301 CA   MET     39      0.0224     24.6879     26.1000
   309 CA   PHE     40      0.0137     23.9001     21.5600
   320 CA   SER     41      0.0207     24.5357     21.6800
   326 CA   ALA     42      0.0360     25.9202     28.4100
   331 CA   LEU     43      0.0205     24.5183     25.9000
   339 CA   SER     44      0.0158     24.0896     29.3000
   345 CA   GLU     45      0.0296     25.3393     24.6500
   354 CA   GLY     46      0.0217     24.6225     23.7700
   358 CA   ALA     47      0.0131     23.8455     20.1000
   363 CA   THR     48      0.0112     23.6658     20.1500
   370 CA   PRO     49      0.0085     23.4211     18.4600
   377 CA   GLN     50      0.0120     23.7435     23.1600
   386 CA   ASP     51      0.0122     23.7578     20.1600
   394 CA   LEU     52      0.0082     23.3998     18.3500
   402 CA   ASN     53      0.0090     23.4691     21.5100
   410 CA   THR     54      0.0123     23.7700     23.9200
   417 CA   MET     55      0.0101     23.5702     21.0600
   425 CA   LEU     56      0.0089     23.4593     22.6300
   433 CA   ASN     57      0.0147     23.9863     26.5300
   441 CA   THR     58      0.0179     24.2770     31.6300
   448 CA   VAL     59      0.0196     24.4344     32.3200
   455 CA   GLY     60      0.0687     28.8884     42.1600
   459 CA   GLY     61      0.1163     33.2099     49.3800
   463 CA   HIS     62      0.0286     25.2458     46.2000
   473 CA   GLN     63      0.0559     27.7329     42.0100
   482 CA   ALA     64      0.0420     26.4654     40.5200
   487 CA   ALA     65      0.0184     24.3241     32.7100
   492 CA   MET     66      0.0135     23.8783     30.5400
   500 CA   GLN     67      0.0215     24.6081     36.7500
   509 CA   MET     68      0.0171     24.2023     28.7800
   517 CA   LEU     69      0.0098     23.5443     25.0100
   525 CA   LYS     70      0.0128     23.8188     22.8700
   534 CA   GLU     71      0.0197     24.4424     23.4400
   543 CA   THR     72      0.0128     23.8133     24.9900
   550 CA   ILE     73      0.0086     23.4334     20.9400
   558 CA   ASN     74      0.0143     23.9505     21.8700
   566 CA   GLU     75      0.0216     24.6132     21.8700
   575 CA   GLU     76      0.0137     23.8994     21.0800
   584 CA   ALA     77      0.0107     23.6254     19.1600
   589 CA   ALA     78      0.0249     24.9123     22.8400
   594 CA   GLU     79      0.0388     26.1767     23.1300
   603 CA   TRP     80      0.0191     24.3837     19.0700
   617 CA   ASP     81      0.0265     25.0583     25.8400
   625 CA   ARG     82      0.0678     28.8061     30.9800
   636 CA   LEU     83      0.0674     28.7746     24.7400
   644 CA   HIS     84      0.0514     27.3241     28.1700
   654 CA   PRO     85      0.1545     36.6806     31.5500
   661 CA   VAL     86      0.2810     48.1680     38.4100
   668 CA   ARG     97      0.0855     30.4172     26.6100
   679 CA   GLU     98      0.0363     25.9512     25.9500
   688 CA   PRO     99      0.0147     23.9871     23.0900
   695 CA   ARG    100      0.0152     24.0302     19.7600
   706 CA   GLY    101      0.0101     23.5689     19.8800
   710 CA   SER    102      0.0103     23.5900     22.3400
   716 CA   ASP    103      0.0102     23.5778     20.7700
   724 CA   ILE    104      0.0072     23.3098     18.1500
   732 CA   ALA    105      0.0068     23.2727     20.7500
   737 CA   GLY    106      0.0094     23.5025     21.1900
   741 CA   THR    107      0.0134     23.8676     24.8800
   748 CA   THR    108      0.0182     24.3035     20.6100
   755 CA   SER    109      0.0163     24.1289     22.5900
   761 CA   THR    110      0.0398     26.2634     22.5500
   768 CA   LEU    111      0.0225     24.6916     19.9100
   776 CA   GLN    112      0.0382     26.1229     26.4900
   785 CA   GLU    113      0.0219     24.6386     24.4100
   794 CA   GLN    114      0.0130     23.8326     18.0800
   803 CA   ILE    115      0.0205     24.5165     23.0600
   811 CA   GLY    116      0.0286     25.2509     22.0200
   815 CA   TRP    117      0.0187     24.3552     20.1000
   829 CA   MET    118      0.0197     24.4443     18.8100
   837 CA   THR    119      0.0456     26.7948     25.4400
   844 CA   HIS    120      0.0558     27.7215     27.7800
   854 CA   ASN    121      0.1502     36.2945     30.7100
   862 CA   PRO    122      0.1718     38.2560     29.8000
   869 CA   PRO    123      0.0612     28.2074     30.3900
   876 CA   ILE    124      0.0275     25.1490     21.9600
   884 CA   PRO    125      0.0206     24.5206     19.7100
   891 CA   VAL    126      0.0097     23.5318     16.3500
   898 CA   GLY    127      0.0104     23.5958     12.9300
   902 CA   GLU    128      0.0136     23.8858     16.0500
   911 CA   ILE    129      0.0116     23.7051     15.0100
   919 CA   TYR    130      0.0079     23.3681     15.3100
   931 CA   LYS    131      0.0108     23.6324     17.4400
   940 CA   ARG    132      0.0163     24.1346     19.0400
   941 CA   ARG    132      0.0163     24.1361     19.1700
   959 CA   TRP    133      0.0094     23.5061     17.0500
   973 CA   ILE    134      0.0080     23.3809     15.2200
   981 CA   ILE    135      0.0121     23.7487     16.7700
   989 CA   LEU    136      0.0156     24.0679     18.8200
   997 CA   GLY    137      0.0114     23.6913     22.8700
  1001 CA   LEU    138      0.0109     23.6410     19.6700
  1009 CA   ASN    139      0.0222     24.6690     22.6600
  1017 CA   LYS    140      0.0234     24.7805     22.1200
  1026 CA   ILE    141      0.0165     24.1486     25.1800
  1034 CA   VAL    142      0.0215     24.6072     26.5600
  1041 CA   ARG    143      0.0544     27.5908     34.2500
  1052 CA   MET    144      0.0480     27.0094     30.2100
  1060 CA   TYR    145      0.0400     26.2812     27.9600
  1072 CA   SER    146      0.1281     34.2833     37.5700
  1078 CA   PRO    322      0.0671     28.7448     30.9100
  1085 CA   VAL    323      0.0141     23.9300     28.5100
  1092 CA   LEU    324      0.0142     23.9392     25.5300
  1100 CA   PHE    325      0.0326     25.6151     35.1600
  1111 CA   PRO    326      0.0589     27.9975     42.6100
  1118 CA   GLY    327      0.0998     31.7192     42.7400
  1122 CA   GLN    328      0.0282     25.2176     43.5300
  1131 CA   PRO    329      0.0262     25.0338     30.5900
  1138 CA   PHE    330      0.0102     23.5821     24.5600
  1149 CA   GLY    331      0.0142     23.9382     26.9600
  1153 CA   GLN    332      0.0282     25.2105     30.3400
  1162 CA   PRO    333      0.0417     26.4434     30.9000
  1169 CA   PRO    334      0.0530     27.4671     25.5000
  1176 CA   LEU    335      0.2041     41.1900     28.1700
  1184 CA   GLY    336      0.5765     74.9962     37.8400

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.