Residue-by-residue B-factor prediction for CA atoms
B-factors are computed based on the first 100 normal modes (B-PREDICT)
and are scaled to match the overall B-factors in the submitted model (B-SCALED).
A high correlation with the observations is an indicator that the normal modes capture well the
overall flexibility features of the model.
Comparison of the observed (B-OBS, blue) and the
computed (B-SCALED, red) B-factors for
all C-alpha atoms is presented below.
Differences between B-factors from normal mode analysis
and from X-ray crystallographic data may for example indicate regions where
the protein flexibility is modified due to external factors such as
tight crystall-packing.
ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS
B-SCALED
B-OBS
2 CA ASP 113 0.0100
15 CA LEU 114 0.0084
34 CA LYS 115 0.0039
56 CA TRP 116 0.0026
80 CA HIS 117 0.0113
97 CA HIS 118 0.0072
114 CA HIS 119 0.0054
131 CA ASN 120 0.0058
145 CA ILE 121 0.0022
164 CA THR 122 0.0027
178 CA TYR 123 0.0017
199 CA TRP 124 0.0025
223 CA ILE 125 0.0019
242 CA GLN 126 0.0036
259 CA ASN 127 0.0033
273 CA TYR 128 0.0037
294 CA SER 129 0.0029
305 CA GLU 130 0.0095
320 CA ASP 131 0.0047
332 CA LEU 132 0.0042
351 CA PRO 133 0.0099
365 CA ARG 134 0.0059
389 CA ALA 135 0.0101
399 CA VAL 136 0.0047
415 CA ILE 137 0.0024
434 CA ASP 138 0.0030
446 CA ASP 139 0.0046
458 CA ALA 140 0.0020
468 CA PHE 141 0.0014
488 CA ALA 142 0.0024
498 CA ARG 143 0.0034
522 CA ALA 144 0.0015
532 CA PHE 145 0.0015
552 CA ALA 146 0.0031
562 CA LEU 147 0.0022
581 CA TRP 148 0.0014
605 CA SER 149 0.0028
616 CA ALA 150 0.0081
626 CA VAL 151 0.0039
642 CA THR 152 0.0032
656 CA PRO 153 0.0072
670 CA LEU 154 0.0029
689 CA THR 155 0.0048
703 CA PHE 156 0.0022
723 CA THR 157 0.0056
737 CA ARG 158 0.0040
761 CA VAL 159 0.0051
777 CA TYR 160 0.0111
798 CA SER 161 0.0092
809 CA ARG 162 0.0126
833 CA ASP 163 0.0164
845 CA ALA 164 0.0037
855 CA ASP 165 0.0023
867 CA ILE 166 0.0013
886 CA VAL 167 0.0019
902 CA ILE 168 0.0012
921 CA GLN 169 0.0016
938 CA PHE 170 0.0016
958 CA GLY 171 0.0031
965 CA VAL 172 0.0056
981 CA ALA 173 0.0084
991 CA GLU 174 0.0125
1006 CA HIS 175 0.0074
1023 CA GLY 176 0.0280
1030 CA ASP 177 0.0103
1042 CA GLY 178 0.0201
1049 CA TYR 179 0.0089
1070 CA PRO 180 0.0079
1084 CA PHE 181 0.0037
1104 CA ASP 182 0.0071
1116 CA GLY 183 0.0078
1123 CA LYS 184 0.0105
1145 CA ASP 185 0.0080
1157 CA GLY 186 0.0075
1164 CA LEU 187 0.0033
1183 CA LEU 188 0.0017
1202 CA ALA 189 0.0013
1212 CA HIS 190 0.0017
1229 CA ALA 191 0.0014
1239 CA PHE 192 0.0029
1259 CA PRO 193 0.0032
1273 CA PRO 194 0.0028
1287 CA GLY 195 0.0054
1294 CA PRO 196 0.0211
1308 CA GLY 197 0.0139
1315 CA ILE 198 0.0059
1334 CA GLN 199 0.0043
1351 CA GLY 200 0.0018
1358 CA ASP 201 0.0017
1370 CA ALA 202 0.0011
1380 CA HIS 203 0.0014
1397 CA PHE 204 0.0010
1417 CA ASP 205 0.0018
1429 CA ASP 206 0.0023
1441 CA ASP 207 0.0049
1453 CA GLU 208 0.0027
1468 CA LEU 209 0.0042
1487 CA TRP 210 0.0017
1511 CA SER 211 0.0030
1522 CA LEU 212 0.0032
1541 CA GLY 213 0.0040
1548 CA LYS 214 0.0156
1570 CA GLY 215 0.0413
1577 CA VAL 216 0.0272
1593 CA GLY 217 0.0049
1600 CA TYR 218 0.0022
1621 CA SER 219 0.0018
1632 CA LEU 220 0.0012
1651 CA PHE 221 0.0015
1671 CA LEU 222 0.0015
1690 CA VAL 223 0.0011
1706 CA ALA 224 0.0010
1716 CA ALA 225 0.0011
1726 CA HIS 226 0.0011
1743 CA GLU 227 0.0010
1758 CA PHE 228 0.0009
1778 CA GLY 229 0.0011
1785 CA HIS 230 0.0014
1802 CA ALA 231 0.0012
1812 CA LEU 232 0.0013
1831 CA GLY 233 0.0023
1838 CA LEU 234 0.0020
1857 CA ASP 235 0.0069
1869 CA HIS 236 0.0039
1886 CA SER 237 0.0052
1897 CA SER 238 0.0154
1908 CA VAL 239 0.0081
1924 CA PRO 240 0.0092
1938 CA GLU 241 0.0088
1953 CA ALA 242 0.0037
1963 CA LEU 243 0.0016
1982 CA MET 244 0.0018
1999 CA TYR 245 0.0036
2020 CA PRO 246 0.0035
2034 CA MET 247 0.0050
2051 CA TYR 248 0.0029
2072 CA ARG 249 0.0074
2096 CA PHE 250 0.0060
2116 CA THR 251 0.0073
2130 CA GLU 252 0.0240
2145 CA GLY 253 0.0512
2152 CA PRO 254 0.0194
2166 CA PRO 255 0.0034
2180 CA LEU 256 0.0030
2199 CA HIS 257 0.0053
2216 CA LYS 258 0.0096
2238 CA ASP 259 0.0057
2250 CA ASP 260 0.0024
2262 CA VAL 261 0.0035
2278 CA ASN 262 0.0066
2292 CA GLY 263 0.0043
2299 CA ILE 264 0.0023
2318 CA ARG 265 0.0055
2342 CA HIS 266 0.0105
2359 CA LEU 267 0.0043
2378 CA TYR 268 0.0037
2399 CA GLY 269 0.0132
2466 CA CA 304 0.0012
2467 CA CA 305 0.0016
2468 CA CA 306 0.0020
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.