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***  a2a  ***

Normal Mode Analysis for ID 2212190634311610

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2021
mode 8 1.22 0.0751
mode 9 1.28 0.2034
mode 10 1.45 0.2838
mode 11 1.50 0.3098
mode 12 1.52 0.2127
mode 13 1.71 0.1880
mode 14 1.83 0.1805
mode 15 1.95 0.1639
mode 16 2.06 0.3135
mode 17 2.13 0.0886
mode 18 2.26 0.1227
mode 19 2.32 0.2433
mode 20 2.40 0.2376
mode 21 2.54 0.0502
mode 22 2.66 0.3248
mode 23 2.67 0.0783
mode 24 2.75 0.2835
mode 25 2.91 0.2773
mode 26 3.08 0.1825
mode 27 3.20 0.1106
mode 28 3.21 0.2868
mode 29 3.35 0.0529
mode 30 3.47 0.3828
mode 31 3.52 0.0359
mode 32 3.66 0.4389
mode 33 3.73 0.3775
mode 34 3.83 0.3294
mode 35 3.94 0.3820
mode 36 4.05 0.4631
mode 37 4.09 0.3067
mode 38 4.14 0.2567
mode 39 4.29 0.0846
mode 40 4.34 0.4605
mode 41 4.38 0.2742
mode 42 4.41 0.3320
mode 43 4.50 0.3822
mode 44 4.54 0.2406
mode 45 4.61 0.2461
mode 46 4.70 0.2114
mode 47 4.84 0.3710
mode 48 4.86 0.4359
mode 49 4.99 0.4025
mode 50 5.03 0.4511
mode 51 5.16 0.4380
mode 52 5.17 0.3924
mode 53 5.26 0.4711
mode 54 5.35 0.2318
mode 55 5.43 0.5002
mode 56 5.48 0.4338
mode 57 5.55 0.4092
mode 58 5.59 0.2728
mode 59 5.61 0.4168
mode 60 5.73 0.4697
mode 61 5.81 0.4827
mode 62 5.84 0.1697
mode 63 6.00 0.3028
mode 64 6.06 0.4699
mode 65 6.11 0.4026
mode 66 6.14 0.3171
mode 67 6.19 0.4042
mode 68 6.24 0.3865
mode 69 6.28 0.3552
mode 70 6.30 0.3506
mode 71 6.37 0.4009
mode 72 6.39 0.4179
mode 73 6.42 0.3529
mode 74 6.47 0.3148
mode 75 6.51 0.3345
mode 76 6.56 0.3947
mode 77 6.57 0.3542
mode 78 6.63 0.3986
mode 79 6.66 0.5045
mode 80 6.69 0.4211
mode 81 6.75 0.4106
mode 82 6.82 0.4851
mode 83 6.94 0.3998
mode 84 6.95 0.4008
mode 85 7.00 0.3561
mode 86 7.06 0.4905
mode 87 7.10 0.4657
mode 88 7.17 0.2971
mode 89 7.23 0.4506
mode 90 7.27 0.3336
mode 91 7.35 0.3450
mode 92 7.37 0.3208
mode 93 7.41 0.3967
mode 94 7.47 0.3284
mode 95 7.50 0.3674
mode 96 7.52 0.2828
mode 97 7.58 0.3949
mode 98 7.64 0.3847
mode 99 7.65 0.2943
mode 100 7.69 0.1819
mode 101 7.71 0.4013
mode 102 7.72 0.3567
mode 103 7.77 0.2391
mode 104 7.81 0.3769
mode 105 7.90 0.3615
mode 106 7.91 0.2849

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.