CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  pigment_half_540nm  ***

Normal Mode Analysis for ID 221209044421126344

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.4716
mode 8 1.05 0.3462
mode 9 1.69 0.4255
mode 10 1.87 0.4330
mode 11 2.06 0.5796
mode 12 2.12 0.4669
mode 13 2.31 0.6397
mode 14 2.52 0.6245
mode 15 2.55 0.3708
mode 16 2.69 0.6425
mode 17 2.74 0.7344
mode 18 2.91 0.6470
mode 19 3.02 0.5570
mode 20 3.04 0.6560
mode 21 3.11 0.6957
mode 22 3.19 0.6779
mode 23 3.32 0.6895
mode 24 3.45 0.6137
mode 25 3.47 0.7689
mode 26 3.61 0.6410
mode 27 3.92 0.7171
mode 28 4.11 0.6335
mode 29 4.24 0.5669
mode 30 4.39 0.5061

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.