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***  Phrb Pseudomonas fluorescens model 5   ***

Normal Mode Analysis for ID 221006205537110470

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0282
mode 8 1.47 0.0284
mode 9 1.82 0.1823
mode 10 1.88 0.2242
mode 11 2.06 0.0722
mode 12 2.19 0.2460
mode 13 2.37 0.4006
mode 14 2.82 0.4407
mode 15 2.95 0.3184
mode 16 3.20 0.5237
mode 17 3.30 0.0338
mode 18 3.45 0.3098
mode 19 3.53 0.3954
mode 20 3.69 0.5337
mode 21 3.71 0.3966
mode 22 3.94 0.2216
mode 23 4.02 0.1534
mode 24 4.14 0.0579
mode 25 4.31 0.3403
mode 26 4.35 0.4370
mode 27 4.39 0.2861
mode 28 4.66 0.2160
mode 29 4.70 0.4562
mode 30 4.79 0.4040
mode 31 4.85 0.5269
mode 32 4.99 0.4238
mode 33 5.09 0.3697
mode 34 5.14 0.4170
mode 35 5.32 0.4424
mode 36 5.48 0.4387
mode 37 5.51 0.2884
mode 38 5.55 0.3533
mode 39 5.65 0.2942
mode 40 5.75 0.3048
mode 41 5.77 0.3311
mode 42 5.86 0.4405
mode 43 5.90 0.4005
mode 44 6.05 0.5887
mode 45 6.15 0.5014
mode 46 6.17 0.3370
mode 47 6.22 0.5865
mode 48 6.40 0.0851
mode 49 6.44 0.5552
mode 50 6.49 0.2944
mode 51 6.55 0.2394
mode 52 6.64 0.4047
mode 53 6.68 0.4846
mode 54 6.86 0.5346
mode 55 6.95 0.3630
mode 56 7.00 0.3706
mode 57 7.01 0.2020
mode 58 7.08 0.4423
mode 59 7.15 0.4974
mode 60 7.17 0.1375
mode 61 7.26 0.4183
mode 62 7.32 0.4194
mode 63 7.35 0.4160
mode 64 7.44 0.3312
mode 65 7.46 0.5368
mode 66 7.49 0.4961
mode 67 7.57 0.3239
mode 68 7.62 0.4021
mode 69 7.67 0.4167
mode 70 7.69 0.3163
mode 71 7.76 0.4231
mode 72 7.81 0.4632
mode 73 7.86 0.2448
mode 74 7.91 0.3713
mode 75 8.03 0.4716
mode 76 8.06 0.4405
mode 77 8.13 0.5352
mode 78 8.16 0.4209
mode 79 8.23 0.4718
mode 80 8.25 0.4722
mode 81 8.34 0.3959
mode 82 8.38 0.4941
mode 83 8.43 0.4324
mode 84 8.46 0.1350
mode 85 8.49 0.3759
mode 86 8.53 0.4413
mode 87 8.57 0.4513
mode 88 8.62 0.4140
mode 89 8.68 0.4211
mode 90 8.70 0.4307
mode 91 8.75 0.4377
mode 92 8.80 0.4442
mode 93 8.83 0.1850
mode 94 8.86 0.4007
mode 95 8.89 0.4897
mode 96 8.96 0.3746
mode 97 8.98 0.4231
mode 98 9.00 0.3389
mode 99 9.02 0.4165
mode 100 9.08 0.4039
mode 101 9.08 0.4446
mode 102 9.11 0.4293
mode 103 9.16 0.3224
mode 104 9.21 0.1327
mode 105 9.23 0.3609
mode 106 9.26 0.4530

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.