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Normal Mode Analysis for ID 22092917190249717

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0103
mode 8 1.45 0.0064
mode 9 1.88 0.0682
mode 10 2.37 0.0623
mode 11 2.84 0.1127
mode 12 3.01 0.2366
mode 13 3.56 0.2370
mode 14 3.61 0.3542
mode 15 3.76 0.1547
mode 16 3.80 0.0552
mode 17 3.93 0.2767
mode 18 4.19 0.2980
mode 19 4.22 0.0379
mode 20 4.28 0.3091
mode 21 4.41 0.1448
mode 22 4.60 0.4198
mode 23 4.62 0.3712
mode 24 4.80 0.4188
mode 25 4.96 0.1580
mode 26 5.05 0.4757
mode 27 5.19 0.4830
mode 28 5.34 0.2944
mode 29 5.44 0.5089
mode 30 5.51 0.2245
mode 31 5.60 0.3019
mode 32 5.71 0.2584
mode 33 5.82 0.4032
mode 34 5.87 0.5114
mode 35 5.91 0.3169
mode 36 5.97 0.3417
mode 37 6.07 0.3197
mode 38 6.09 0.2217
mode 39 6.23 0.3025
mode 40 6.26 0.4324
mode 41 6.33 0.5659
mode 42 6.36 0.3482
mode 43 6.45 0.3111
mode 44 6.48 0.3937
mode 45 6.56 0.4674
mode 46 6.65 0.5104
mode 47 6.72 0.3696
mode 48 6.78 0.2999
mode 49 6.88 0.1727
mode 50 6.99 0.2962
mode 51 7.01 0.4581
mode 52 7.16 0.4187
mode 53 7.22 0.1533
mode 54 7.28 0.3349
mode 55 7.38 0.4227
mode 56 7.41 0.3487
mode 57 7.46 0.4401
mode 58 7.55 0.3693
mode 59 7.59 0.3446
mode 60 7.65 0.4682
mode 61 7.69 0.3032
mode 62 7.79 0.4950
mode 63 7.83 0.3536
mode 64 7.95 0.4561
mode 65 7.96 0.3980
mode 66 8.01 0.4707
mode 67 8.03 0.4795
mode 68 8.07 0.2123
mode 69 8.15 0.3576
mode 70 8.17 0.4798
mode 71 8.18 0.3878
mode 72 8.25 0.2373
mode 73 8.29 0.2839
mode 74 8.29 0.3832
mode 75 8.31 0.2155
mode 76 8.38 0.4769
mode 77 8.42 0.2353
mode 78 8.47 0.3891
mode 79 8.51 0.2576
mode 80 8.55 0.1791
mode 81 8.56 0.4918
mode 82 8.62 0.2950
mode 83 8.66 0.1829
mode 84 8.67 0.4830
mode 85 8.71 0.2451
mode 86 8.71 0.2759
mode 87 8.73 0.2854
mode 88 8.76 0.3687
mode 89 8.80 0.2591
mode 90 8.85 0.2050
mode 91 8.85 0.3092
mode 92 8.86 0.1155
mode 93 8.91 0.4649
mode 94 8.96 0.3628
mode 95 8.97 0.4629
mode 96 9.01 0.4394
mode 97 9.04 0.3931
mode 98 9.08 0.4417
mode 99 9.12 0.4131
mode 100 9.14 0.3446
mode 101 9.19 0.1820
mode 102 9.21 0.1503
mode 103 9.21 0.1715
mode 104 9.26 0.3345
mode 105 9.29 0.3463
mode 106 9.31 0.3464

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.