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Normal Mode Analysis for ID 220926155553133140

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5738
mode 8 1.21 0.6111
mode 9 1.71 0.0815
mode 10 1.87 0.5832
mode 11 2.03 0.0141
mode 12 2.14 0.4374
mode 13 2.35 0.5331
mode 14 2.40 0.5886
mode 15 2.54 0.5337
mode 16 2.72 0.1719
mode 17 2.81 0.1768
mode 18 2.91 0.2781
mode 19 2.99 0.5389
mode 20 3.05 0.5153
mode 21 3.22 0.2614
mode 22 3.30 0.4417
mode 23 3.37 0.3445
mode 24 3.60 0.1000
mode 25 3.62 0.2153
mode 26 3.66 0.4832
mode 27 3.68 0.3452
mode 28 3.74 0.4703
mode 29 3.87 0.2170
mode 30 3.89 0.4479
mode 31 3.96 0.2851
mode 32 4.08 0.4064
mode 33 4.18 0.3331
mode 34 4.19 0.1157
mode 35 4.29 0.2265
mode 36 4.36 0.4047
mode 37 4.38 0.3612
mode 38 4.47 0.3370
mode 39 4.51 0.4121
mode 40 4.53 0.4779
mode 41 4.64 0.5723
mode 42 4.67 0.3416
mode 43 4.77 0.5251
mode 44 4.81 0.5019
mode 45 4.87 0.4043
mode 46 4.92 0.4094
mode 47 4.98 0.3843
mode 48 5.10 0.5124
mode 49 5.13 0.0197
mode 50 5.18 0.4293
mode 51 5.19 0.3641
mode 52 5.22 0.3646
mode 53 5.26 0.3486
mode 54 5.31 0.4229
mode 55 5.38 0.5438
mode 56 5.44 0.2406
mode 57 5.46 0.3853
mode 58 5.58 0.4802
mode 59 5.61 0.2948
mode 60 5.68 0.5655
mode 61 5.69 0.4162
mode 62 5.72 0.5176
mode 63 5.74 0.4476
mode 64 5.79 0.3274
mode 65 5.84 0.3901
mode 66 5.90 0.3873
mode 67 5.94 0.3900
mode 68 5.96 0.4037
mode 69 6.05 0.4439
mode 70 6.07 0.4770
mode 71 6.09 0.3249
mode 72 6.12 0.3285
mode 73 6.13 0.3227
mode 74 6.21 0.3249
mode 75 6.22 0.4126
mode 76 6.28 0.2904
mode 77 6.30 0.4095
mode 78 6.33 0.3489
mode 79 6.39 0.4563
mode 80 6.40 0.4195
mode 81 6.46 0.3355
mode 82 6.52 0.5019
mode 83 6.55 0.4662
mode 84 6.57 0.4221
mode 85 6.61 0.4201
mode 86 6.66 0.3963
mode 87 6.71 0.3800
mode 88 6.74 0.4236
mode 89 6.81 0.4167
mode 90 6.83 0.4074
mode 91 6.83 0.4517
mode 92 6.85 0.3219
mode 93 6.87 0.4225
mode 94 6.93 0.1897
mode 95 6.99 0.5546
mode 96 7.02 0.5102
mode 97 7.07 0.4262
mode 98 7.13 0.5037
mode 99 7.17 0.4644
mode 100 7.20 0.2168
mode 101 7.21 0.4890
mode 102 7.21 0.3415
mode 103 7.29 0.4084
mode 104 7.31 0.4594
mode 105 7.41 0.1912
mode 106 7.41 0.4773

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.