CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***    ***

Normal Mode Analysis for ID 22090915583059321

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0609
mode 8 1.63 0.1226
mode 9 2.55 0.2043
mode 10 3.13 0.0725
mode 11 4.89 0.3298
mode 12 5.73 0.3905
mode 13 6.59 0.0880
mode 14 9.85 0.4351
mode 15 11.22 0.4375
mode 16 11.68 0.2637
mode 17 12.95 0.4738
mode 18 14.44 0.4780
mode 19 15.07 0.0969
mode 20 16.82 0.6690
mode 21 17.65 0.5864
mode 22 19.55 0.6486
mode 23 19.95 0.4062
mode 24 20.92 0.6752
mode 25 22.13 0.3105
mode 26 23.84 0.3798
mode 27 24.42 0.4742
mode 28 25.52 0.3712
mode 29 26.46 0.6390
mode 30 27.36 0.3534
mode 31 27.83 0.6665
mode 32 28.43 0.3779
mode 33 29.84 0.4529
mode 34 32.30 0.4859
mode 35 33.41 0.3287
mode 36 34.89 0.3791
mode 37 37.47 0.4390
mode 38 39.04 0.4807
mode 39 39.47 0.5456
mode 40 41.20 0.5301
mode 41 41.99 0.4439
mode 42 43.05 0.3512
mode 43 45.32 0.3732
mode 44 46.50 0.4709
mode 45 47.25 0.6656
mode 46 48.65 0.5327
mode 47 48.98 0.4409
mode 48 50.41 0.4462
mode 49 51.59 0.1578
mode 50 52.28 0.3896
mode 51 53.53 0.1411
mode 52 55.02 0.3892
mode 53 55.97 0.2573
mode 54 58.45 0.4587
mode 55 59.13 0.5676
mode 56 60.35 0.4847
mode 57 62.03 0.5883
mode 58 63.38 0.6227
mode 59 64.44 0.3523
mode 60 65.49 0.2302
mode 61 68.38 0.2844
mode 62 69.68 0.3753
mode 63 70.48 0.4365
mode 64 71.50 0.5621
mode 65 73.55 0.5615
mode 66 75.23 0.5428
mode 67 76.21 0.5770
mode 68 77.30 0.5485
mode 69 81.27 0.6926
mode 70 82.87 0.2392
mode 71 84.86 0.6512
mode 72 85.21 0.5245
mode 73 87.53 0.5284
mode 74 88.99 0.4683
mode 75 90.72 0.5563
mode 76 91.77 0.2081
mode 77 92.29 0.3977
mode 78 92.80 0.4743
mode 79 95.99 0.3526
mode 80 96.63 0.4073
mode 81 97.80 0.5099
mode 82 98.74 0.5428
mode 83 101.71 0.5177
mode 84 103.42 0.4317
mode 85 104.68 0.2602
mode 86 105.55 0.3518
mode 87 107.30 0.4617
mode 88 108.19 0.6301
mode 89 108.46 0.4754
mode 90 109.99 0.3115
mode 91 111.57 0.3956
mode 92 112.47 0.3849
mode 93 115.46 0.4889
mode 94 116.19 0.4244
mode 95 117.35 0.4694
mode 96 118.82 0.4910
mode 97 119.69 0.4230
mode 98 120.66 0.5592
mode 99 121.30 0.3706
mode 100 121.88 0.1869
mode 101 124.92 0.4610
mode 102 125.85 0.3292
mode 103 126.67 0.4794
mode 104 128.29 0.5427
mode 105 131.32 0.4673
mode 106 132.79 0.4910

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.