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***  TRANSFERASE/RNA 05-DEC-14 4RWN  ***

Normal Mode Analysis for ID 22083111085091848

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5675
mode 8 1.21 0.5874
mode 9 1.56 0.0611
mode 10 1.85 0.6111
mode 11 2.03 0.0149
mode 12 2.12 0.4409
mode 13 2.33 0.4034
mode 14 2.39 0.6051
mode 15 2.54 0.5166
mode 16 2.65 0.2393
mode 17 2.79 0.1217
mode 18 2.92 0.2798
mode 19 2.98 0.5537
mode 20 3.04 0.4597
mode 21 3.11 0.1997
mode 22 3.28 0.5119
mode 23 3.36 0.3754
mode 24 3.60 0.1038
mode 25 3.61 0.1963
mode 26 3.66 0.4973
mode 27 3.67 0.3798
mode 28 3.73 0.4755
mode 29 3.85 0.2519
mode 30 3.88 0.3317
mode 31 3.96 0.2580
mode 32 4.02 0.1981
mode 33 4.11 0.3026
mode 34 4.19 0.1322
mode 35 4.26 0.2968
mode 36 4.30 0.1803
mode 37 4.36 0.4024
mode 38 4.39 0.3793
mode 39 4.48 0.3847
mode 40 4.52 0.3955
mode 41 4.54 0.4843
mode 42 4.66 0.5332
mode 43 4.67 0.3982
mode 44 4.77 0.5133
mode 45 4.81 0.4953
mode 46 4.86 0.3927
mode 47 4.92 0.4405
mode 48 4.99 0.3939
mode 49 5.10 0.5131
mode 50 5.13 0.0199
mode 51 5.18 0.3630
mode 52 5.19 0.4524
mode 53 5.25 0.3480
mode 54 5.31 0.4131
mode 55 5.31 0.4826
mode 56 5.40 0.5393
mode 57 5.44 0.1815
mode 58 5.54 0.4123
mode 59 5.58 0.4002
mode 60 5.64 0.4216
mode 61 5.68 0.4872
mode 62 5.71 0.5335
mode 63 5.72 0.4615
mode 64 5.75 0.4561
mode 65 5.83 0.4154
mode 66 5.87 0.3831
mode 67 5.93 0.4138
mode 68 5.94 0.3973
mode 69 6.04 0.3652
mode 70 6.05 0.4949
mode 71 6.09 0.3313
mode 72 6.12 0.3342
mode 73 6.12 0.3183
mode 74 6.19 0.3483
mode 75 6.21 0.3156
mode 76 6.27 0.3492
mode 77 6.30 0.4168
mode 78 6.32 0.2878
mode 79 6.38 0.4687
mode 80 6.41 0.3618
mode 81 6.45 0.3322
mode 82 6.51 0.4927
mode 83 6.54 0.3999
mode 84 6.55 0.4019
mode 85 6.58 0.4578
mode 86 6.66 0.3989
mode 87 6.69 0.3749
mode 88 6.73 0.4309
mode 89 6.78 0.4665
mode 90 6.81 0.4060
mode 91 6.82 0.3839
mode 92 6.85 0.3578
mode 93 6.87 0.4191
mode 94 6.93 0.1582
mode 95 6.97 0.5051
mode 96 7.01 0.5312
mode 97 7.02 0.4930
mode 98 7.11 0.5031
mode 99 7.13 0.5140
mode 100 7.18 0.3462
mode 101 7.19 0.3009
mode 102 7.20 0.4891
mode 103 7.25 0.3202
mode 104 7.28 0.4035
mode 105 7.32 0.4586
mode 106 7.41 0.2034

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.