CNRS Nantes University UFIP UFIP
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  markelzLastMinute  ***

Normal Mode Analysis for ID 22030900130571040

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0097
mode 8 1.26 0.5221
mode 9 1.47 0.3803
mode 10 1.89 0.4781
mode 11 2.07 0.0527
mode 12 2.43 0.3832
mode 13 2.56 0.4896
mode 14 2.59 0.4612
mode 15 2.73 0.3125
mode 16 2.81 0.3219
mode 17 2.92 0.2274
mode 18 2.97 0.3918
mode 19 3.20 0.3111
mode 20 3.29 0.4995
mode 21 3.33 0.4126
mode 22 3.40 0.6275
mode 23 3.44 0.1733
mode 24 3.54 0.5063
mode 25 3.60 0.3854
mode 26 3.69 0.2051
mode 27 3.71 0.1020
mode 28 3.76 0.5533
mode 29 3.82 0.2866
mode 30 3.91 0.5408
mode 31 3.91 0.3996
mode 32 3.96 0.2912
mode 33 4.04 0.4703
mode 34 4.12 0.3446
mode 35 4.20 0.3105
mode 36 4.23 0.3848
mode 37 4.27 0.4010
mode 38 4.38 0.0522
mode 39 4.43 0.2179
mode 40 4.45 0.5763
mode 41 4.50 0.1855
mode 42 4.55 0.2316
mode 43 4.58 0.3987
mode 44 4.61 0.3823
mode 45 4.68 0.3556
mode 46 4.71 0.2744
mode 47 4.73 0.2812
mode 48 4.80 0.2673
mode 49 4.82 0.3332
mode 50 4.84 0.1887
mode 51 4.91 0.4824
mode 52 4.99 0.3687
mode 53 5.05 0.4108
mode 54 5.07 0.3099
mode 55 5.08 0.4290
mode 56 5.13 0.4986
mode 57 5.17 0.3445
mode 58 5.19 0.4127
mode 59 5.21 0.4772
mode 60 5.27 0.3516
mode 61 5.28 0.4846
mode 62 5.31 0.1284
mode 63 5.33 0.0942
mode 64 5.43 0.4148
mode 65 5.46 0.2200
mode 66 5.48 0.4206
mode 67 5.50 0.2932
mode 68 5.53 0.3124
mode 69 5.54 0.2824
mode 70 5.57 0.2848
mode 71 5.60 0.2815
mode 72 5.61 0.2624
mode 73 5.65 0.3196
mode 74 5.65 0.1199
mode 75 5.69 0.4181
mode 76 5.72 0.4135
mode 77 5.77 0.3770
mode 78 5.80 0.3117
mode 79 5.81 0.2268
mode 80 5.84 0.2311
mode 81 5.87 0.2356
mode 82 5.91 0.1356
mode 83 5.91 0.2849
mode 84 5.95 0.1877
mode 85 5.96 0.1424
mode 86 5.99 0.2600
mode 87 6.03 0.1103
mode 88 6.04 0.0318
mode 89 6.08 0.3449
mode 90 6.13 0.3240
mode 91 6.15 0.3844
mode 92 6.16 0.3170
mode 93 6.20 0.3967
mode 94 6.22 0.4186
mode 95 6.25 0.4272
mode 96 6.26 0.4178
mode 97 6.27 0.3855
mode 98 6.30 0.2849
mode 99 6.31 0.4054
mode 100 6.35 0.3645
mode 101 6.37 0.3486
mode 102 6.39 0.3653
mode 103 6.40 0.4735
mode 104 6.45 0.3777
mode 105 6.47 0.3045
mode 106 6.50 0.3937

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.