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***  m2open  ***

Normal Mode Analysis for ID 21090804063211364

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0465
mode 8 1.01 0.5259
mode 9 1.26 0.3113
mode 10 1.35 0.4046
mode 11 1.88 0.1570
mode 12 1.97 0.2704
mode 13 2.31 0.2379
mode 14 2.50 0.1538
mode 15 2.55 0.1962
mode 16 2.78 0.1031
mode 17 2.88 0.3600
mode 18 3.00 0.2630
mode 19 3.19 0.1383
mode 20 3.39 0.2460
mode 21 3.48 0.1410
mode 22 3.68 0.1114
mode 23 3.81 0.3453
mode 24 3.92 0.4490
mode 25 4.16 0.3021
mode 26 4.40 0.3578
mode 27 4.48 0.2147
mode 28 4.58 0.3083
mode 29 4.75 0.2296
mode 30 5.00 0.2987
mode 31 5.22 0.3142
mode 32 5.34 0.1894
mode 33 5.52 0.4052
mode 34 5.72 0.3051
mode 35 5.74 0.3500
mode 36 5.84 0.2487
mode 37 5.88 0.1415
mode 38 5.99 0.3085
mode 39 6.04 0.1529
mode 40 6.09 0.2351
mode 41 6.19 0.2508
mode 42 6.26 0.2877
mode 43 6.43 0.0360
mode 44 6.52 0.4151
mode 45 6.61 0.4536
mode 46 6.79 0.3270
mode 47 6.89 0.3880
mode 48 7.02 0.1308
mode 49 7.21 0.4073
mode 50 7.26 0.3120
mode 51 7.35 0.0661
mode 52 7.43 0.2770
mode 53 7.54 0.2726
mode 54 7.63 0.3518
mode 55 7.73 0.3904
mode 56 7.78 0.3435
mode 57 7.88 0.2183
mode 58 7.97 0.3379
mode 59 8.07 0.2240
mode 60 8.09 0.3764
mode 61 8.19 0.4543
mode 62 8.28 0.4448
mode 63 8.33 0.3337
mode 64 8.41 0.3093
mode 65 8.42 0.3794
mode 66 8.49 0.3417
mode 67 8.58 0.3785
mode 68 8.68 0.1723
mode 69 8.71 0.3017
mode 70 8.76 0.4201
mode 71 8.81 0.3301
mode 72 8.89 0.2884
mode 73 8.96 0.4330
mode 74 9.05 0.3171
mode 75 9.08 0.5226
mode 76 9.11 0.3480
mode 77 9.21 0.3906
mode 78 9.28 0.4463
mode 79 9.29 0.4220
mode 80 9.40 0.4947
mode 81 9.51 0.2464
mode 82 9.57 0.5224
mode 83 9.62 0.4066
mode 84 9.64 0.4695
mode 85 9.76 0.3063
mode 86 9.83 0.4417
mode 87 9.92 0.3817
mode 88 9.93 0.5287
mode 89 10.01 0.5022
mode 90 10.07 0.3000
mode 91 10.17 0.4905
mode 92 10.20 0.3397
mode 93 10.20 0.3920
mode 94 10.31 0.4578
mode 95 10.35 0.5086
mode 96 10.37 0.4274
mode 97 10.40 0.4292
mode 98 10.46 0.2600
mode 99 10.53 0.3730
mode 100 10.55 0.3169
mode 101 10.58 0.3881
mode 102 10.60 0.4306
mode 103 10.68 0.4056
mode 104 10.73 0.4040
mode 105 10.78 0.3346
mode 106 10.81 0.4792

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.