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***  2HAD_3um9  ***

Normal Mode Analysis for ID 21082211551169428

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5534
mode 8 1.24 0.5544
mode 9 1.37 0.4855
mode 10 1.71 0.0737
mode 11 1.96 0.3897
mode 12 1.97 0.4457
mode 13 2.07 0.1823
mode 14 2.13 0.3358
mode 15 2.23 0.1897
mode 16 2.28 0.6280
mode 17 2.41 0.5040
mode 18 2.55 0.1938
mode 19 2.64 0.2326
mode 20 2.70 0.1897
mode 21 2.75 0.0586
mode 22 2.80 0.1367
mode 23 2.84 0.4888
mode 24 2.99 0.5426
mode 25 3.07 0.5213
mode 26 3.15 0.4144
mode 27 3.16 0.4412
mode 28 3.21 0.4940
mode 29 3.26 0.4945
mode 30 3.30 0.5095
mode 31 3.35 0.3962
mode 32 3.39 0.4321
mode 33 3.45 0.2713
mode 34 3.48 0.4822
mode 35 3.57 0.4127
mode 36 3.63 0.4228
mode 37 3.66 0.4853
mode 38 3.71 0.3675
mode 39 3.77 0.3357
mode 40 3.85 0.5081
mode 41 3.86 0.3964
mode 42 3.93 0.5189
mode 43 3.93 0.4274
mode 44 4.00 0.4341
mode 45 4.04 0.6079
mode 46 4.07 0.4224
mode 47 4.09 0.4138
mode 48 4.17 0.4336
mode 49 4.22 0.5220
mode 50 4.27 0.3747
mode 51 4.32 0.4338
mode 52 4.34 0.3865
mode 53 4.39 0.3387
mode 54 4.43 0.4860
mode 55 4.45 0.4725
mode 56 4.51 0.5772
mode 57 4.57 0.4959
mode 58 4.59 0.4123
mode 59 4.61 0.4128
mode 60 4.63 0.4798
mode 61 4.66 0.4532
mode 62 4.69 0.4576
mode 63 4.71 0.4825
mode 64 4.72 0.4269
mode 65 4.78 0.4669
mode 66 4.84 0.5484
mode 67 4.85 0.5128
mode 68 4.90 0.5810
mode 69 4.94 0.4922
mode 70 4.95 0.4250
mode 71 4.99 0.4475
mode 72 5.00 0.5063
mode 73 5.03 0.3966
mode 74 5.08 0.5173
mode 75 5.11 0.4173
mode 76 5.13 0.3431
mode 77 5.15 0.4788
mode 78 5.19 0.5458
mode 79 5.22 0.4333
mode 80 5.25 0.3284
mode 81 5.28 0.5309
mode 82 5.29 0.4540
mode 83 5.31 0.4290
mode 84 5.34 0.4542
mode 85 5.38 0.5251
mode 86 5.41 0.5153
mode 87 5.43 0.4790
mode 88 5.45 0.5535
mode 89 5.48 0.3389
mode 90 5.50 0.4883
mode 91 5.55 0.5285
mode 92 5.57 0.3962
mode 93 5.59 0.3746
mode 94 5.62 0.4078
mode 95 5.64 0.3035
mode 96 5.65 0.4156
mode 97 5.68 0.5056
mode 98 5.73 0.5592
mode 99 5.73 0.4886
mode 100 5.74 0.5106
mode 101 5.77 0.4245
mode 102 5.80 0.4907
mode 103 5.83 0.4699
mode 104 5.84 0.5206
mode 105 5.89 0.4649
mode 106 5.89 0.4557

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.