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Normal Mode Analysis for ID 20122711390853324

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 3 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0523
mode 8 1.73 0.0662
mode 9 2.18 0.3112
mode 10 2.34 0.0992
mode 11 2.55 0.3552
mode 12 3.13 0.2789
mode 13 3.40 0.5790
mode 14 3.45 0.5209
mode 15 3.93 0.3264
mode 16 3.99 0.6088
mode 17 4.27 0.4670
mode 18 4.36 0.5427
mode 19 4.54 0.3976
mode 20 4.69 0.3874
mode 21 4.87 0.3984
mode 22 5.01 0.2953
mode 23 5.18 0.4364
mode 24 5.34 0.3939
mode 25 5.46 0.4583
mode 26 5.54 0.6441
mode 27 5.82 0.5724
mode 28 5.86 0.3715
mode 29 6.03 0.3977
mode 30 6.07 0.2876
mode 31 6.22 0.4521
mode 32 6.33 0.3849
mode 33 6.49 0.5711
mode 34 6.67 0.5090
mode 35 6.74 0.5120
mode 36 6.87 0.4531
mode 37 6.96 0.4259
mode 38 7.08 0.6346
mode 39 7.16 0.5450
mode 40 7.35 0.5947
mode 41 7.45 0.4901
mode 42 7.51 0.3228
mode 43 7.58 0.4110
mode 44 7.67 0.4858
mode 45 7.70 0.6595
mode 46 7.79 0.4765
mode 47 7.96 0.5663
mode 48 7.97 0.4319
mode 49 8.08 0.5301
mode 50 8.18 0.4937
mode 51 8.21 0.5238
mode 52 8.31 0.4333
mode 53 8.45 0.4603
mode 54 8.53 0.4238
mode 55 8.63 0.3085
mode 56 8.71 0.5286
mode 57 8.80 0.4750
mode 58 8.81 0.5035
mode 59 9.04 0.4788
mode 60 9.05 0.5473
mode 61 9.12 0.4900
mode 62 9.16 0.4129
mode 63 9.22 0.5973
mode 64 9.33 0.3572
mode 65 9.40 0.3049
mode 66 9.48 0.4332
mode 67 9.54 0.4893
mode 68 9.57 0.3142
mode 69 9.67 0.4592
mode 70 9.79 0.4384
mode 71 9.80 0.5198
mode 72 9.86 0.3808
mode 73 9.94 0.4733
mode 74 9.96 0.5068
mode 75 10.05 0.3708
mode 76 10.08 0.5079
mode 77 10.12 0.4369
mode 78 10.17 0.4604
mode 79 10.21 0.5197
mode 80 10.27 0.4222
mode 81 10.34 0.4981
mode 82 10.41 0.5096
mode 83 10.44 0.4766
mode 84 10.50 0.5316
mode 85 10.59 0.4346
mode 86 10.64 0.2713
mode 87 10.67 0.3233
mode 88 10.78 0.4636
mode 89 10.80 0.5268
mode 90 10.88 0.4331
mode 91 10.91 0.5189
mode 92 10.97 0.4884
mode 93 11.04 0.5152
mode 94 11.08 0.4659
mode 95 11.10 0.5143
mode 96 11.13 0.3532
mode 97 11.20 0.4491
mode 98 11.23 0.4411
mode 99 11.28 0.3479
mode 100 11.29 0.4981
mode 101 11.33 0.5596
mode 102 11.37 0.4877
mode 103 11.42 0.3939
mode 104 11.52 0.4482
mode 105 11.63 0.4614
mode 106 11.66 0.5481

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.