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Normal Mode Analysis for ID 20120216454217942

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0233
mode 8 1.20 0.0214
mode 9 2.70 0.0134
mode 10 2.86 0.0318
mode 11 4.19 0.0329
mode 12 6.32 0.0035
mode 13 6.60 0.0315
mode 14 7.21 0.2164
mode 15 7.54 0.1655
mode 16 8.00 0.3000
mode 17 8.24 0.2088
mode 18 9.03 0.1735
mode 19 9.24 0.3332
mode 20 10.44 0.4262
mode 21 10.94 0.0711
mode 22 11.28 0.0652
mode 23 12.68 0.0698
mode 24 12.91 0.4227
mode 25 13.90 0.1417
mode 26 14.26 0.5270
mode 27 14.70 0.5519
mode 28 14.91 0.5518
mode 29 15.13 0.2491
mode 30 15.42 0.3669
mode 31 15.95 0.4349
mode 32 16.15 0.0319
mode 33 16.39 0.4126
mode 34 16.78 0.1749
mode 35 16.95 0.2910
mode 36 17.37 0.0053
mode 37 17.91 0.5570
mode 38 18.37 0.4349
mode 39 18.75 0.2823
mode 40 19.00 0.4754
mode 41 19.04 0.5027
mode 42 19.45 0.3628
mode 43 19.86 0.2355
mode 44 20.19 0.1390
mode 45 20.62 0.0882
mode 46 20.93 0.6321
mode 47 21.08 0.4357
mode 48 21.16 0.1989
mode 49 21.45 0.2619
mode 50 21.90 0.3057
mode 51 22.22 0.2250
mode 52 22.41 0.4672
mode 53 22.51 0.1529
mode 54 22.65 0.3542
mode 55 22.96 0.3733
mode 56 23.60 0.2357
mode 57 23.84 0.2993
mode 58 23.91 0.3720
mode 59 24.14 0.3588
mode 60 24.42 0.3048
mode 61 24.67 0.4766
mode 62 24.82 0.4028
mode 63 25.13 0.3859
mode 64 25.45 0.4363
mode 65 25.81 0.4969
mode 66 26.18 0.2947
mode 67 26.38 0.2852
mode 68 26.42 0.5430
mode 69 26.76 0.3472
mode 70 26.98 0.4795
mode 71 27.23 0.2588
mode 72 27.36 0.3002
mode 73 27.54 0.4534
mode 74 27.80 0.4715
mode 75 28.33 0.3753
mode 76 28.48 0.5698
mode 77 28.83 0.2543
mode 78 29.02 0.3918
mode 79 29.16 0.5269
mode 80 29.41 0.3647
mode 81 29.63 0.3465
mode 82 29.91 0.4456
mode 83 30.02 0.6085
mode 84 30.28 0.4800
mode 85 30.34 0.5395
mode 86 30.58 0.4562
mode 87 30.78 0.3485
mode 88 31.03 0.5317
mode 89 31.33 0.4880
mode 90 31.49 0.3892
mode 91 31.54 0.4547
mode 92 31.90 0.4379
mode 93 32.23 0.0224
mode 94 32.33 0.3984
mode 95 32.50 0.4355
mode 96 32.56 0.4073
mode 97 32.90 0.4319
mode 98 33.06 0.4178
mode 99 33.20 0.4592
mode 100 33.32 0.5349
mode 101 33.49 0.5399
mode 102 33.63 0.4433
mode 103 33.87 0.5309
mode 104 34.28 0.3818
mode 105 34.33 0.4871
mode 106 34.54 0.5810

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.