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***  TRANSPORT PROTEIN 20-JUN-16 5GHK  ***

Normal Mode Analysis for ID 20112707095998351

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3844
mode 8 1.10 0.4467
mode 9 1.53 0.5895
mode 10 1.68 0.4730
mode 11 1.97 0.3895
mode 12 2.23 0.3610
mode 13 2.31 0.5830
mode 14 2.46 0.4781
mode 15 2.69 0.4948
mode 16 2.84 0.6225
mode 17 2.99 0.4038
mode 18 3.10 0.5916
mode 19 3.21 0.4855
mode 20 3.40 0.4661
mode 21 3.76 0.5371
mode 22 3.91 0.5013
mode 23 4.00 0.5960
mode 24 4.18 0.0586
mode 25 4.34 0.5725
mode 26 4.47 0.4996
mode 27 4.67 0.3822
mode 28 4.69 0.3904
mode 29 4.89 0.5429
mode 30 4.93 0.3472
mode 31 5.05 0.4667
mode 32 5.26 0.3910
mode 33 5.32 0.5179
mode 34 5.38 0.2690
mode 35 5.45 0.4769
mode 36 5.53 0.1853
mode 37 5.67 0.2560
mode 38 5.72 0.3767
mode 39 5.77 0.3754
mode 40 5.83 0.4193
mode 41 5.92 0.5274
mode 42 5.98 0.4793
mode 43 6.06 0.2770
mode 44 6.21 0.3938
mode 45 6.25 0.3634
mode 46 6.39 0.4362
mode 47 6.45 0.1702
mode 48 6.57 0.4823
mode 49 6.68 0.1498
mode 50 6.76 0.5657
mode 51 6.86 0.3244
mode 52 6.91 0.3106
mode 53 6.96 0.3224
mode 54 7.00 0.3983
mode 55 7.13 0.3845
mode 56 7.15 0.3625
mode 57 7.25 0.3231
mode 58 7.31 0.3335
mode 59 7.41 0.5101
mode 60 7.49 0.2050
mode 61 7.57 0.3011
mode 62 7.59 0.2888
mode 63 7.61 0.0878
mode 64 7.69 0.3203
mode 65 7.71 0.5550
mode 66 7.79 0.4376
mode 67 7.83 0.4512
mode 68 7.89 0.5714
mode 69 7.93 0.3789
mode 70 8.01 0.4865
mode 71 8.08 0.4131
mode 72 8.12 0.4677
mode 73 8.16 0.4716
mode 74 8.19 0.3844
mode 75 8.25 0.3380
mode 76 8.34 0.3093
mode 77 8.35 0.4861
mode 78 8.47 0.4115
mode 79 8.53 0.3661
mode 80 8.56 0.3684
mode 81 8.65 0.3771
mode 82 8.70 0.4397
mode 83 8.74 0.2790
mode 84 8.80 0.2013
mode 85 8.84 0.4356
mode 86 8.94 0.4527
mode 87 8.99 0.3785
mode 88 9.02 0.4944
mode 89 9.07 0.3555
mode 90 9.11 0.3971
mode 91 9.12 0.4104
mode 92 9.16 0.4467
mode 93 9.23 0.4165
mode 94 9.30 0.3169
mode 95 9.32 0.2670
mode 96 9.38 0.4353
mode 97 9.44 0.4384
mode 98 9.48 0.4349
mode 99 9.53 0.5281
mode 100 9.56 0.3880
mode 101 9.65 0.4410
mode 102 9.72 0.4648
mode 103 9.78 0.5460
mode 104 9.82 0.4520
mode 105 9.85 0.3998
mode 106 9.90 0.3587

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.