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***  SIGNALING PROTEIN/AGONIST 18-SEP-13 4MS4  ***

Normal Mode Analysis for ID 20111300122393249

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2301
mode 8 1.08 0.2148
mode 9 1.17 0.5016
mode 10 1.33 0.3597
mode 11 1.56 0.0135
mode 12 1.95 0.7288
mode 13 1.97 0.0064
mode 14 2.09 0.6659
mode 15 2.29 0.6860
mode 16 2.42 0.1680
mode 17 2.68 0.3735
mode 18 2.72 0.3743
mode 19 2.93 0.3044
mode 20 3.03 0.2638
mode 21 3.05 0.2865
mode 22 3.18 0.0841
mode 23 3.19 0.3420
mode 24 3.29 0.1537
mode 25 3.37 0.3544
mode 26 3.44 0.1976
mode 27 3.53 0.3866
mode 28 3.53 0.3405
mode 29 3.62 0.3691
mode 30 3.74 0.3133
mode 31 3.79 0.2588
mode 32 3.83 0.3614
mode 33 3.87 0.4393
mode 34 3.92 0.5427
mode 35 3.97 0.3741
mode 36 3.99 0.3481
mode 37 4.03 0.4639
mode 38 4.12 0.4358
mode 39 4.19 0.3679
mode 40 4.25 0.3945
mode 41 4.27 0.3950
mode 42 4.29 0.2388
mode 43 4.34 0.4070
mode 44 4.37 0.4452
mode 45 4.38 0.3164
mode 46 4.44 0.3353
mode 47 4.47 0.4673
mode 48 4.56 0.2462
mode 49 4.60 0.4716
mode 50 4.62 0.2733
mode 51 4.68 0.2478
mode 52 4.72 0.4859
mode 53 4.73 0.4598
mode 54 4.78 0.4344
mode 55 4.84 0.4848
mode 56 4.86 0.5065
mode 57 4.88 0.4908
mode 58 4.93 0.3534
mode 59 5.00 0.4754
mode 60 5.02 0.3438
mode 61 5.04 0.3904
mode 62 5.08 0.4621
mode 63 5.14 0.3469
mode 64 5.17 0.3956
mode 65 5.21 0.3555
mode 66 5.25 0.3286
mode 67 5.35 0.4673
mode 68 5.37 0.2599
mode 69 5.43 0.3943
mode 70 5.47 0.1486
mode 71 5.48 0.4114
mode 72 5.52 0.4077
mode 73 5.53 0.2880
mode 74 5.57 0.4940
mode 75 5.61 0.2958
mode 76 5.64 0.4651
mode 77 5.71 0.2737
mode 78 5.75 0.4366
mode 79 5.77 0.5018
mode 80 5.81 0.3669
mode 81 5.83 0.3990
mode 82 5.86 0.3804
mode 83 5.88 0.4398
mode 84 5.91 0.4003
mode 85 5.93 0.4290
mode 86 5.95 0.5366
mode 87 5.98 0.4015
mode 88 6.02 0.3293
mode 89 6.05 0.3293
mode 90 6.10 0.5229
mode 91 6.13 0.5285
mode 92 6.14 0.4590
mode 93 6.15 0.4461
mode 94 6.24 0.4993
mode 95 6.25 0.4578
mode 96 6.26 0.5136
mode 97 6.29 0.5014
mode 98 6.32 0.5240
mode 99 6.35 0.5084
mode 100 6.39 0.4406
mode 101 6.44 0.4843
mode 102 6.48 0.4715
mode 103 6.49 0.4251
mode 104 6.52 0.5310
mode 105 6.55 0.5301
mode 106 6.56 0.5161

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: October 18th, 2018.