Should you encounter any unexpected behaviour,
please let us know.

* COMPLEX (ONCOGENE PROTEIN/PEPTIDE) 30-SEP-96 1YCR *

B-factor analysis for ID 250414175419455224

Overall B-factor prediction

Correlation= 0.560 for 98 C-alpha atoms.

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS	B-SCALED	B-OBS
2 CA GLU 25 0.0841 62.4404 50.4300
11 CA THR 26 0.0299 29.1769 48.4300
18 CA LEU 27 0.0292 28.7456 35.1600
26 CA VAL 28 0.0139 19.3640 26.9700
33 CA ARG 29 0.0164 20.8983 37.1900
44 CA PRO 30 0.0138 19.3118 31.6600
51 CA LYS 31 0.0186 22.2579 25.6500
60 CA PRO 32 0.0431 37.3133 28.8300
67 CA LEU 33 0.0181 21.9696 30.7500
75 CA LEU 34 0.0107 17.3985 24.2400
83 CA LEU 35 0.0137 19.2663 23.9800
91 CA LYS 36 0.0207 23.5587 31.7200
100 CA LEU 37 0.0117 18.0233 24.6800
108 CA LEU 38 0.0096 16.7589 29.4700
116 CA LYS 39 0.0190 22.4886 34.8200
125 CA SER 40 0.0321 30.5774 36.7200
131 CA VAL 41 0.0194 22.7863 30.1800
138 CA GLY 42 0.0904 66.3008 26.9800
142 CA ALA 43 0.0190 22.4858 33.1100
147 CA GLN 44 0.0597 47.4737 40.6400
156 CA LYS 45 0.0268 27.2718 35.3500
165 CA ASP 46 0.0282 28.1314 43.1800
173 CA THR 47 0.0201 23.1771 37.7700
180 CA TYR 48 0.0119 18.1891 25.5400
192 CA THR 49 0.0166 21.0392 22.9600
199 CA MET 50 0.0113 17.8203 28.0500
207 CA LYS 51 0.0186 22.2432 24.3300
216 CA GLU 52 0.0150 20.0352 17.6300
225 CA VAL 53 0.0082 15.9076 15.6100
232 CA LEU 54 0.0112 17.7075 17.7800
240 CA PHE 55 0.0192 22.6624 12.2000
251 CA TYR 56 0.0111 17.6621 21.0800
263 CA LEU 57 0.0076 15.5435 21.4300
271 CA GLY 58 0.0138 19.3463 12.3000
275 CA GLN 59 0.0147 19.8981 16.0200
284 CA TYR 60 0.0117 18.0162 14.5700
296 CA ILE 61 0.0091 16.4204 13.4800
304 CA MET 62 0.0133 19.0076 26.1900
312 CA THR 63 0.0321 30.5639 27.6700
319 CA LYS 64 0.0225 24.6845 16.2700
328 CA ARG 65 0.0306 29.6278 14.4900
339 CA LEU 66 0.0109 17.5201 9.0600
347 CA TYR 67 0.0110 17.6185 12.5100
359 CA ASP 68 0.0177 21.7421 19.5600
367 CA GLU 69 0.0392 34.9291 26.2400
376 CA LYS 70 0.0590 47.0329 34.4700
385 CA GLN 71 0.0267 27.2113 27.3000
394 CA GLN 72 0.0123 18.3829 16.7300
403 CA HIS 73 0.0108 17.4840 13.9600
413 CA ILE 74 0.0116 17.9677 9.0800
421 CA VAL 75 0.0080 15.7611 4.3100
428 CA TYR 76 0.0152 20.1695 9.8200
440 CA CYS 77 0.0140 19.4572 17.2400
446 CA SER 78 0.0397 35.2279 33.8900
452 CA ASN 79 0.0723 55.2256 43.6200
460 CA ASP 80 0.0202 23.2343 29.5200
468 CA LEU 81 0.0155 20.3781 30.5900
476 CA LEU 82 0.0104 17.2617 18.8700
484 CA GLY 83 0.0158 20.5410 19.7200
488 CA ASP 84 0.0283 28.1868 27.8200
496 CA LEU 85 0.0146 19.8292 31.2800
504 CA PHE 86 0.0126 18.5842 22.6500
515 CA GLY 87 0.0365 33.2300 19.3200
519 CA VAL 88 0.0236 25.3178 18.2000
526 CA PRO 89 0.0461 39.1619 15.0100
533 CA SER 90 0.0192 22.6627 15.3000
539 CA PHE 91 0.0114 17.8751 13.0100
550 CA SER 92 0.0163 20.8630 12.9900
556 CA VAL 93 0.0090 16.3731 18.3000
563 CA LYS 94 0.0211 23.8083 15.7200
572 CA GLU 95 0.0232 25.0763 23.8200
581 CA HIS 96 0.0168 21.1801 18.6900
591 CA ARG 97 0.0413 36.1953 15.0900
602 CA LYS 98 0.0197 22.9442 20.5000
611 CA ILE 99 0.0101 17.0741 15.0100
619 CA TYR 100 0.0156 20.4216 18.8100
631 CA THR 101 0.0187 22.3473 13.1000
638 CA MET 102 0.0129 18.7592 14.0300
646 CA ILE 103 0.0098 16.8957 17.5800
654 CA TYR 104 0.0185 22.2048 30.9000
666 CA ARG 105 0.0281 28.1021 34.3700
677 CA ASN 106 0.0143 19.6196 27.3400
685 CA LEU 107 0.0137 19.2731 28.9400
693 CA VAL 108 0.0388 34.6762 34.5900
700 CA VAL 109 0.0599 47.6202 40.7800
707 CA GLU 17 0.0602 47.7724 50.8900
716 CA THR 18 0.0386 34.5535 32.1700
723 CA PHE 19 0.0110 17.6093 17.7300
734 CA SER 20 0.0234 25.2385 26.3000
740 CA ASP 21 0.0354 32.5407 28.7900
748 CA LEU 22 0.0144 19.7088 21.8500
756 CA TRP 23 0.0111 17.6536 20.1000
770 CA LYS 24 0.0317 30.2717 35.4800
779 CA LEU 25 0.0334 31.3374 28.4300
787 CA LEU 26 0.0164 20.9017 30.5800
795 CA PRO 27 0.0284 28.2718 32.9100
802 CA GLU 28 0.0286 28.4230 41.4200
811 CA ASN 29 0.0251 26.2599 37.7200

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.

Should you encounter any unexpected behaviour, please let us know.