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***  Computational Prediction of Protein Flexibility Using Normal Mode Analysis (NMA)  ***

Normal Mode Analysis for ID 2503311020141252338

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6129
mode 8 1.12 0.6156
mode 9 1.82 0.3933
mode 10 2.30 0.6582
mode 11 2.54 0.6023
mode 12 3.44 0.4256
mode 13 3.85 0.5285
mode 14 4.04 0.6094
mode 15 4.59 0.0961
mode 16 4.81 0.2991
mode 17 4.99 0.3870
mode 18 5.38 0.1245
mode 19 5.54 0.1591
mode 20 5.74 0.1917
mode 21 6.03 0.1570
mode 22 6.23 0.1168
mode 23 6.48 0.0486
mode 24 6.83 0.0347
mode 25 6.91 0.2037
mode 26 7.08 0.1140
mode 27 7.13 0.0392
mode 28 7.21 0.0971
mode 29 7.29 0.0500
mode 30 7.55 0.0907
mode 31 7.59 0.0498
mode 32 7.72 0.0956
mode 33 7.92 0.1336
mode 34 7.93 0.0072
mode 35 8.03 0.1504
mode 36 8.20 0.1712
mode 37 8.29 0.1749
mode 38 8.39 0.0458
mode 39 8.44 0.0969
mode 40 8.57 0.0491
mode 41 8.67 0.0941
mode 42 8.80 0.0571
mode 43 8.88 0.0364
mode 44 8.97 0.0522
mode 45 8.99 0.1119
mode 46 9.06 0.0350
mode 47 9.25 0.1734
mode 48 9.28 0.0584
mode 49 9.40 0.0550
mode 50 9.47 0.0898
mode 51 9.56 0.0762
mode 52 9.72 0.1051
mode 53 9.75 0.1018
mode 54 9.81 0.1421
mode 55 9.85 0.0741
mode 56 9.95 0.0637
mode 57 10.04 0.0906
mode 58 10.06 0.0805
mode 59 10.15 0.1260
mode 60 10.22 0.0117
mode 61 10.31 0.0816
mode 62 10.43 0.0284
mode 63 10.46 0.0576
mode 64 10.49 0.0940
mode 65 10.50 0.0933
mode 66 10.54 0.0502
mode 67 10.67 0.1489
mode 68 10.72 0.0500
mode 69 10.79 0.0641
mode 70 10.82 0.0335
mode 71 10.94 0.1533
mode 72 10.99 0.0246
mode 73 11.06 0.1112
mode 74 11.13 0.1001
mode 75 11.13 0.0809
mode 76 11.17 0.0636
mode 77 11.19 0.0679
mode 78 11.23 0.0144
mode 79 11.28 0.1413
mode 80 11.30 0.0430
mode 81 11.33 0.1084
mode 82 11.39 0.0914
mode 83 11.41 0.0538
mode 84 11.44 0.1294
mode 85 11.45 0.0405
mode 86 11.57 0.0647
mode 87 11.65 0.0387
mode 88 11.68 0.0252
mode 89 11.74 0.0689
mode 90 11.79 0.0616
mode 91 11.83 0.0595
mode 92 11.87 0.1031
mode 93 11.89 0.1062
mode 94 11.95 0.0512
mode 95 11.96 0.0848
mode 96 12.04 0.0660
mode 97 12.07 0.0235
mode 98 12.11 0.1095
mode 99 12.19 0.0876
mode 100 12.26 0.0987
mode 101 12.28 0.0736
mode 102 12.33 0.0606
mode 103 12.36 0.0415
mode 104 12.46 0.0333
mode 105 12.47 0.0768
mode 106 12.50 0.1148

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.