Should you encounter any unexpected behaviour,
please let us know.

* *

Normal Mode Analysis for ID 250328123818879029

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 22 Norm= 1.0001 %Projmod-Wn> Eigenvector 25 Norm= 1.0001 %Projmod-Wn> Eigenvector 44 Norm= 1.0001

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)

mode 7 1.00 0.0792 0.000 0.3421

mode 8 1.04 0.0433 0.000 0.0257

mode 9 1.09 0.3952 0.000 0.3080

mode 10 1.38 0.0839 0.000 0.0015

mode 11 1.44 0.0348 0.000 0.1694

mode 12 1.59 0.0936 0.000 -0.3069

mode 13 1.73 0.0337 0.000 -0.1380

mode 14 1.84 0.1144 0.000 -0.1075

mode 15 2.08 0.1618 0.000 -0.1301

mode 16 2.44 0.0519 0.000 -0.0824

mode 17 2.52 0.1387 0.000 0.3643

mode 18 2.66 0.0824 0.000 0.0913

mode 19 2.68 0.0919 0.000 0.2202

mode 20 3.06 0.0589 0.000 -0.0496

mode 21 3.34 0.1281 0.000 0.2145

mode 22 3.47 0.3813 0.000 -0.2135

mode 23 3.61 0.3651 0.000 0.4976

mode 24 3.78 0.3159 0.000 0.2207

mode 25 3.90 0.0209 0.000 0.0454

mode 26 4.03 0.1710 0.000 0.0273

mode 27 4.16 0.0316 0.000 0.0677

mode 28 4.40 0.3862 0.000 -0.3770

mode 29 4.47 0.3273 0.001 0.6500

mode 30 4.62 0.0793 0.001 0.1311

mode 31 4.76 0.0524 0.001 0.0563

mode 32 4.88 0.0768 0.001 0.1521

mode 33 5.08 0.0782 0.001 0.0168

mode 34 5.57 0.0558 0.001 0.0219

mode 35 5.62 0.0657 0.001 0.0578

mode 36 5.80 0.1074 0.001 0.1212

mode 37 6.14 0.0744 0.001 -0.7522

mode 38 6.25 0.0262 0.001 0.0850

mode 39 6.56 0.2853 0.001 -0.0441

mode 40 6.71 0.1670 0.001 0.0123

mode 41 6.81 0.2361 0.001 0.2569

mode 42 7.13 0.2567 0.001 -0.4015

mode 43 7.23 0.2335 0.001 -0.3640

mode 44 7.56 0.2058 0.001 -0.4642

mode 45 7.67 0.2096 0.001 0.4173

mode 46 7.86 0.1677 0.001 -0.5095

mode 47 8.00 0.2993 0.001 0.0040

mode 48 8.32 0.2777 0.001 -0.2348

mode 49 8.46 0.2323 0.001 0.2348

mode 50 8.72 0.0728 0.001 0.3520

mode 51 8.93 0.2000 0.001 -0.1481

mode 52 9.02 0.1330 0.001 -0.0921

mode 53 9.23 0.1169 0.001 0.1723

mode 54 9.46 0.3015 0.001 0.0690

mode 55 9.67 0.1935 0.001 0.0091

mode 56 9.72 0.2035 0.001 -0.1530

mode 57 9.85 0.1761 0.001 0.1055

mode 58 9.95 0.2317 0.001 -0.1714

mode 59 10.03 0.1496 0.001 0.2439

mode 60 10.20 0.0484 0.001 -0.1917

mode 61 10.41 0.3501 0.001 0.4090

mode 62 11.01 0.3522 0.001 1.0177

mode 63 11.21 0.2024 0.001 0.4557

mode 64 11.36 0.4468 0.001 0.3390

mode 65 11.41 0.4630 0.001 0.3888

mode 66 11.83 0.3925 0.001 -0.0516

mode 67 11.86 0.4184 0.001 0.1327

mode 68 12.17 0.4633 0.001 0.2635

mode 69 12.20 0.0027 0.001 0.0296

mode 70 12.39 0.3332 0.001 0.2162

mode 71 12.45 0.4510 0.002 0.2548

mode 72 12.54 0.3391 0.002 -0.0320

mode 73 12.76 0.4302 0.002 0.2239

mode 74 12.82 0.0672 0.002 0.3567

mode 75 12.90 0.2827 0.002 -0.1862

mode 76 13.21 0.3355 0.002 -0.1575

mode 77 13.27 0.3591 0.002 0.6142

mode 78 13.37 0.2984 0.002 0.4277

mode 79 13.49 0.1840 0.002 -0.0645

mode 80 13.53 0.2780 0.002 -0.1867

mode 81 13.62 0.0107 0.002 0.0365

mode 82 13.97 0.1039 0.002 0.4820

mode 83 14.27 0.0710 0.002 0.3336

mode 84 14.45 0.0073 0.002 -0.0531

mode 85 14.52 0.2615 0.002 -0.2023

mode 86 14.65 0.2700 0.002 -0.4026

mode 87 14.81 0.4090 0.002 0.4922

mode 88 14.92 0.4042 0.002 0.3639

mode 89 15.29 0.2402 0.002 -0.0677

mode 90 15.53 0.0701 0.002 -0.0023

mode 91 15.62 0.3270 0.002 0.5114

mode 92 15.89 0.1524 0.002 0.0754

mode 93 15.99 0.1910 0.002 -0.4586

mode 94 16.11 0.3563 0.002 -0.2159

mode 95 16.23 0.3433 0.002 0.4637

mode 96 16.30 0.4311 0.002 -0.2475

mode 97 16.56 0.4116 0.002 -0.0046

mode 98 16.59 0.5150 0.002 0.1931

mode 99 16.87 0.4906 0.002 0.7709

mode 100 16.91 0.4113 0.002 -0.0989

mode 101 17.14 0.3011 0.002 -0.0202

mode 102 17.22 0.4733 0.002 0.5178

mode 103 17.32 0.3687 0.002 0.0416

mode 104 17.42 0.3132 0.002 0.0781

mode 105 17.50 0.4608 0.002 -0.1573

mode 106 17.68 0.0850 0.002 -0.0451

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.

Should you encounter any unexpected behaviour, please let us know.

*** ***

Normal Mode Analysis for ID 250328123818879029

Conformational change expected to be analysed

Should you encounter any unexpected behaviour,
please let us know.

* *