CNRS Nantes University US2B US2B
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***  biophysics capstone  ***

Normal Mode Analysis for ID 2503171118363008294

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2239
mode 8 1.32 0.1871
mode 9 1.59 0.2899
mode 10 1.82 0.4617
mode 11 1.88 0.4038
mode 12 2.38 0.4247
mode 13 2.42 0.5477
mode 14 2.56 0.5878
mode 15 2.62 0.5340
mode 16 2.79 0.5195
mode 17 3.21 0.4653
mode 18 3.36 0.4285
mode 19 3.61 0.4595
mode 20 3.84 0.2838
mode 21 3.91 0.2952
mode 22 4.07 0.4629
mode 23 4.14 0.3692
mode 24 4.24 0.5117
mode 25 4.29 0.5899
mode 26 4.45 0.2422
mode 27 4.71 0.3504
mode 28 4.79 0.4546
mode 29 4.85 0.5283
mode 30 4.94 0.5491
mode 31 5.12 0.4714
mode 32 5.28 0.3425
mode 33 5.61 0.2608
mode 34 5.82 0.4096
mode 35 5.98 0.5038
mode 36 6.22 0.4676
mode 37 6.32 0.4872
mode 38 6.39 0.4319
mode 39 6.55 0.3504
mode 40 6.66 0.5456
mode 41 6.74 0.3692
mode 42 6.85 0.4774
mode 43 6.89 0.4854
mode 44 7.05 0.5979
mode 45 7.26 0.5740
mode 46 7.37 0.4999
mode 47 7.57 0.4658
mode 48 7.72 0.4280
mode 49 7.98 0.5101
mode 50 8.06 0.4629
mode 51 8.25 0.2586
mode 52 8.29 0.4558
mode 53 8.40 0.5034
mode 54 8.49 0.5898
mode 55 8.54 0.4194
mode 56 8.60 0.5761
mode 57 8.72 0.3708
mode 58 8.86 0.4045
mode 59 8.98 0.5261
mode 60 9.09 0.4577
mode 61 9.24 0.4194
mode 62 9.35 0.3831
mode 63 9.49 0.2093
mode 64 9.53 0.4999
mode 65 9.66 0.5882
mode 66 9.79 0.5049
mode 67 9.96 0.5939
mode 68 10.10 0.5483
mode 69 10.24 0.5983
mode 70 10.37 0.4476
mode 71 10.52 0.5780
mode 72 10.70 0.5176
mode 73 10.76 0.5072
mode 74 10.91 0.5588
mode 75 10.93 0.4150
mode 76 10.99 0.4307
mode 77 11.05 0.4722
mode 78 11.21 0.5276
mode 79 11.28 0.1874
mode 80 11.42 0.3856
mode 81 11.51 0.4421
mode 82 11.54 0.4943
mode 83 11.68 0.3001
mode 84 11.82 0.4590
mode 85 12.00 0.4173
mode 86 12.10 0.5016
mode 87 12.16 0.4893
mode 88 12.20 0.3620
mode 89 12.27 0.5068
mode 90 12.38 0.3332
mode 91 12.55 0.4894
mode 92 12.59 0.3257
mode 93 12.61 0.3924
mode 94 12.83 0.3425
mode 95 12.95 0.4925
mode 96 12.97 0.4950
mode 97 13.06 0.3804
mode 98 13.15 0.3212
mode 99 13.32 0.2675
mode 100 13.34 0.2993
mode 101 13.42 0.4295
mode 102 13.47 0.3809
mode 103 13.55 0.5335
mode 104 13.56 0.3871
mode 105 13.68 0.4617
mode 106 13.73 0.2626

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.