CNRS Nantes University US2B US2B
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***  NMDA  ***

Normal Mode Analysis for ID 2503131542382221122

%Projmod-Wn> Different number of atoms for the other conformer. %Projmod-Er> Not enough of them.

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.4155
mode 8 1.29 0.1308
mode 9 1.62 0.1716
mode 10 2.22 0.3146
mode 11 2.60 0.6583
mode 12 3.31 0.5435
mode 13 3.75 0.3264
mode 14 5.25 0.6563
mode 15 6.04 0.1306
mode 16 7.72 0.2468
mode 17 9.39 0.2977
mode 18 11.14 0.1525
mode 19 11.47 0.1810
mode 20 13.35 0.4542
mode 21 14.21 0.7652
mode 22 15.15 0.7604
mode 23 18.76 0.3261
mode 24 19.69 0.5984
mode 25 21.28 0.4360
mode 26 23.36 0.1451
mode 27 24.00 0.3029
mode 28 25.28 0.3693
mode 29 27.53 0.1392
mode 30 29.86 0.0690
mode 31 30.94 0.5016
mode 32 31.18 0.1511
mode 33 32.30 0.0896
mode 34 32.86 0.1920
mode 35 35.14 0.2007
mode 36 36.56 0.0888
mode 37 36.98 0.1443
mode 38 38.29 0.0533
mode 39 38.97 0.0745
mode 40 40.69 0.1069
mode 41 42.32 0.0773
mode 42 43.36 0.3818
mode 43 45.05 0.0025
mode 44 45.87 0.0593
mode 45 47.78 0.4669
mode 46 48.32 0.3071
mode 47 49.51 0.0435
mode 48 49.54 0.4128
mode 49 49.96 0.5239
mode 50 53.78 0.0194
mode 51 54.34 0.2890
mode 52 55.45 0.1524
mode 53 55.86 0.1381
mode 54 57.12 0.2974
mode 55 58.04 0.1163
mode 56 59.10 0.2674
mode 57 60.57 0.2384
mode 58 62.32 0.2620
mode 59 62.71 0.1402
mode 60 63.31 0.2232
mode 61 65.02 0.1058
mode 62 66.08 0.3139
mode 63 66.58 0.2227
mode 64 66.97 0.2236
mode 65 67.24 0.2862
mode 66 68.25 0.2172
mode 67 68.51 0.1212
mode 68 70.07 0.2076
mode 69 70.35 0.1217
mode 70 70.95 0.2991
mode 71 71.22 0.1402
mode 72 72.09 0.4001
mode 73 72.26 0.2836
mode 74 72.70 0.2049
mode 75 73.45 0.1676
mode 76 73.71 0.2239
mode 77 74.96 0.2430
mode 78 76.88 0.2387
mode 79 77.29 0.3399
mode 80 77.47 0.3320
mode 81 78.86 0.3889
mode 82 79.49 0.3746
mode 83 80.06 0.1976
mode 84 80.54 0.1941
mode 85 80.97 0.1654
mode 86 81.43 0.1356
mode 87 82.16 0.3724
mode 88 82.27 0.3456
mode 89 83.02 0.2914
mode 90 83.29 0.3189
mode 91 83.78 0.2818
mode 92 84.29 0.2126
mode 93 85.20 0.1848
mode 94 85.56 0.1660
mode 95 86.88 0.2804
mode 96 87.59 0.3345
mode 97 87.85 0.2936
mode 98 88.26 0.2162
mode 99 88.71 0.1095
mode 100 89.08 0.3964
mode 101 89.23 0.4611
mode 102 89.86 0.2910
mode 103 90.50 0.3251
mode 104 91.28 0.1628
mode 105 92.54 0.3723
mode 106 92.70 0.1796

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.