CNRS Nantes University US2B US2B
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Normal Mode Analysis for ID 25030919391653391

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6231
mode 8 1.00 0.0290
mode 9 1.00 0.0086
mode 10 1.00 0.8053
mode 11 1.00 0.8242
mode 12 1.03 0.0304
mode 13 2493.94 0.0361
mode 14 3497.38 0.0595
mode 15 3915.68 0.0592
mode 16 4539.59 0.1236
mode 17 5292.91 0.5199
mode 18 6219.41 0.3200
mode 19 6326.74 0.4816
mode 20 7487.29 0.1381
mode 21 7802.18 0.5502
mode 22 8075.71 0.3902
mode 23 8692.68 0.3350
mode 24 9192.26 0.1880
mode 25 9919.53 0.3942
mode 26 11068.00 0.2057
mode 27 11786.53 0.5952
mode 28 12140.35 0.4009
mode 29 12961.18 0.5708
mode 30 13272.24 0.2062
mode 31 14307.76 0.5384
mode 32 14555.12 0.5730
mode 33 15135.71 0.4418
mode 34 15524.94 0.2872
mode 35 16394.12 0.4862
mode 36 16887.53 0.4475
mode 37 17410.94 0.1055
mode 38 18038.21 0.4572
mode 39 19055.62 0.4639
mode 40 19196.91 0.3139
mode 41 20082.41 0.2547
mode 42 20183.74 0.5799
mode 43 20719.88 0.3715
mode 44 21254.47 0.2746
mode 45 22027.44 0.3350
mode 46 22718.15 0.2784
mode 47 24510.68 0.4667
mode 48 25074.32 0.1304
mode 49 25906.62 0.5379
mode 50 26264.38 0.5743
mode 51 26640.35 0.4667
mode 52 27427.03 0.2866
mode 53 27638.21 0.3264
mode 54 28273.06 0.4224
mode 55 29108.50 0.4186
mode 56 29188.97 0.5698
mode 57 30444.44 0.5052
mode 58 31110.56 0.4880
mode 59 31234.91 0.3919
mode 60 31508.03 0.3692
mode 61 32270.85 0.1385
mode 62 33693.44 0.5830
mode 63 34780.85 0.3927
mode 64 36442.09 0.5228
mode 65 36804.15 0.5719
mode 66 37436.15 0.6132
mode 67 37869.56 0.4189
mode 68 38537.06 0.4652
mode 69 40106.38 0.4285
mode 70 40624.41 0.3998
mode 71 41358.44 0.4377
mode 72 41604.35 0.4261
mode 73 42273.18 0.5366
mode 74 42788.79 0.5955
mode 75 43533.21 0.4173
mode 76 43801.82 0.5264
mode 77 44126.62 0.5320
mode 78 45245.09 0.5055
mode 79 45492.38 0.4661
mode 80 46182.21 0.5419
mode 81 46959.74 0.4877
mode 82 47295.21 0.5261
mode 83 47916.53 0.5003
mode 84 48540.44 0.2811
mode 85 48938.06 0.3748
mode 86 49610.82 0.5042
mode 87 49877.38 0.1793
mode 88 50162.85 0.4170
mode 89 51029.71 0.3786
mode 90 51803.38 0.4656
mode 91 52740.03 0.4578
mode 92 53364.85 0.3942
mode 93 53982.47 0.5411
mode 94 54255.76 0.3832
mode 95 55095.26 0.3849
mode 96 55298.53 0.3994
mode 97 56186.00 0.5339
mode 98 56249.50 0.4225
mode 99 57023.88 0.4423
mode 100 58095.97 0.5141
mode 101 58550.68 0.5161
mode 102 59001.88 0.5791
mode 103 59526.82 0.4103
mode 104 59646.65 0.5115
mode 105 60284.50 0.3553
mode 106 61183.00 0.4596

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.