CNRS Nantes University US2B US2B
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***  Lyzozyme_1aki_clean_H  ***

CA strain for 250228134049613773

---  normal mode 7  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1VAL 2 -0.0364
VAL 2PHE 3 0.0110
PHE 3GLY 4 -0.0285
GLY 4ARG 5 -0.0433
ARG 5CYS 6 -0.0403
CYS 6GLU 7 -0.0949
GLU 7LEU 8 0.0041
LEU 8ALA 9 -0.0120
ALA 9ALA 10 -0.0122
ALA 10ALA 11 -0.1820
ALA 11MET 12 0.0465
MET 12LYS 13 0.0045
LYS 13ARG 14 -0.0113
ARG 14HIS 15 -0.0741
HIS 15GLY 16 -0.0203
GLY 16LEU 17 0.0181
LEU 17ASP 18 -0.0321
ASP 18ASN 19 0.0439
ASN 19TYR 20 -0.0385
TYR 20ARG 21 0.0369
ARG 21GLY 22 -0.0006
GLY 22TYR 23 -0.0183
TYR 23SER 24 0.0589
SER 24LEU 25 0.0128
LEU 25GLY 26 -0.0384
GLY 26ASN 27 0.0467
ASN 27TRP 28 -0.0213
TRP 28VAL 29 -0.0157
VAL 29CYS 30 -0.0398
CYS 30ALA 31 0.1016
ALA 31ALA 32 -0.0610
ALA 32LYS 33 0.0179
LYS 33PHE 34 -0.0374
PHE 34GLU 35 0.2503
GLU 35SER 36 -0.1303
SER 36ASN 37 0.1015
ASN 37PHE 38 -0.0126
PHE 38ASN 39 0.0241
ASN 39THR 40 -0.0022
THR 40GLN 41 -0.0181
GLN 41ALA 42 0.0405
ALA 42THR 43 0.0711
THR 43ASN 44 -0.0303
ASN 44ARG 45 0.1230
ARG 45ASN 46 -0.0338
ASN 46THR 47 0.1023
THR 47ASP 48 -0.0558
ASP 48GLY 49 -0.0522
GLY 49SER 50 0.0563
SER 50THR 51 -0.0314
THR 51ASP 52 0.1794
ASP 52TYR 53 0.0107
TYR 53GLY 54 0.0195
GLY 54ILE 55 0.0024
ILE 55LEU 56 -0.0037
LEU 56GLN 57 0.1562
GLN 57ILE 58 0.0435
ILE 58ASN 59 0.1806
ASN 59SER 60 0.1165
SER 60ARG 61 -0.0539
ARG 61TRP 62 0.0297
TRP 62TRP 63 -0.0807
TRP 63CYS 64 0.1106
CYS 64ASN 65 0.0746
ASN 65ASP 66 -0.0005
ASP 66GLY 67 -0.0165
GLY 67ARG 68 -0.0535
ARG 68THR 69 0.0921
THR 69PRO 70 -0.0636
PRO 70GLY 71 0.0526
GLY 71SER 72 -0.1151
SER 72ARG 73 0.0403
ARG 73ASN 74 -0.1327
ASN 74LEU 75 0.0248
LEU 75CYS 76 -0.0578
CYS 76ASN 77 0.0322
ASN 77ILE 78 0.0059
ILE 78PRO 79 -0.0352
PRO 79CYS 80 0.1274
CYS 80SER 81 -0.0056
SER 81ALA 82 -0.1364
ALA 82LEU 83 0.0709
LEU 83LEU 84 0.0333
LEU 84SER 85 -0.0965
SER 85SER 86 -0.1715
SER 86ASP 87 0.1074
ASP 87ILE 88 0.0346
ILE 88THR 89 0.0518
THR 89ALA 90 -0.2942
ALA 90SER 91 0.0510
SER 91VAL 92 -0.0882
VAL 92ASN 93 -0.0391
ASN 93CYS 94 -0.0044
CYS 94ALA 95 -0.0529
ALA 95LYS 96 0.0026
LYS 96LYS 97 -0.0171
LYS 97ILE 98 0.0112
ILE 98VAL 99 0.0881
VAL 99SER 100 -0.0306
SER 100ASP 101 0.0840
ASP 101GLY 102 0.0059
GLY 102ASN 103 -0.0422
ASN 103GLY 104 -0.0076
GLY 104MET 105 -0.0285
MET 105ASN 106 -0.0215
ASN 106ALA 107 0.2178
ALA 107TRP 108 -0.0264
TRP 108VAL 109 0.0438
VAL 109ALA 110 -0.0270
ALA 110TRP 111 -0.0198
TRP 111ARG 112 -0.0332
ARG 112ASN 113 -0.0211
ASN 113ARG 114 -0.0071
ARG 114CYS 115 -0.0194
CYS 115LYS 116 -0.0287
LYS 116GLY 117 0.0421
GLY 117THR 118 0.0106
THR 118ASP 119 0.0756
ASP 119VAL 120 -0.0226
VAL 120GLN 121 0.0670
GLN 121ALA 122 -0.0204
ALA 122TRP 123 0.0056
TRP 123ILE 124 0.0716
ILE 124ARG 125 -0.0263
ARG 125GLY 126 0.0592
GLY 126CYS 127 -0.1082
CYS 127ARG 128 0.0576
ARG 128LEU 129 0.0220

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 8th, 2025.